RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 SERPINA12Q8IW75 414 aa4.69□□□□□ -1.66
CCDC88A-210ENST00000468534 OFCC1Q8IZS5 231 aa4.69□□□□□ -1.66
CCDC88A-210ENST00000468534 MCPH1Q8NEM0 835 aa4.69□□□□□ -1.66
CCDC88A-210ENST00000468534 C17orf47Q8NEP4 570 aa4.69□□□□□ -1.66
CCDC88A-210ENST00000468534 BPIFCQ8NFQ6 507 aa4.69□□□□□ -1.66
CCDC88A-210ENST00000468534 ENKURQ8TC29 256 aa4.69□□□□□ -1.66
CCDC88A-210ENST00000468534 SCFD1Q8WVM8 642 aa4.69□□□□□ -1.66
CCDC88A-210ENST00000468534 TSEN15Q8WW01 171 aaKnown RBP4.69□□□□□ -1.66
CCDC88A-210ENST00000468534 DNASE1L2Q92874 299 aa4.69□□□□□ -1.66
CCDC88A-210ENST00000468534 SLC25A28Q96A46 364 aa4.69□□□□□ -1.66
CCDC88A-210ENST00000468534 CHMP6Q96FZ7 201 aa4.69□□□□□ -1.66
CCDC88A-210ENST00000468534 PIGQQ9BRB3 760 aa4.69□□□□□ -1.66
CCDC88A-210ENST00000468534 PKIBQ9C010 78 aa4.69□□□□□ -1.66
CCDC88A-210ENST00000468534 GPR88Q9GZN0 384 aa4.69□□□□□ -1.66
CCDC88A-210ENST00000468534 CDT1Q9H211 546 aa4.69□□□□□ -1.66
CCDC88A-210ENST00000468534 RPF1Q9H9Y2 349 aaKnown RBP4.69□□□□□ -1.66
CCDC88A-210ENST00000468534 FARSBQ9NSD9 589 aaKnown RBP4.69□□□□□ -1.66
CCDC88A-210ENST00000468534 PRMT7Q9NVM4 692 aaPredicted RBP4.69□□□□□ -1.66
CCDC88A-210ENST00000468534 TMEM45AQ9NWC5 275 aa4.69□□□□□ -1.66
CCDC88A-210ENST00000468534 ERAP1Q9NZ08 941 aa4.69□□□□□ -1.66
CCDC88A-210ENST00000468534 GDE1Q9NZC3 331 aa4.69□□□□□ -1.66
CCDC88A-210ENST00000468534 SPG21Q9NZD8 308 aa4.69□□□□□ -1.66
CCDC88A-210ENST00000468534 PEF1Q9UBV8 284 aaKnown RBP4.69□□□□□ -1.66
CCDC88A-210ENST00000468534 KCNN3Q9UGI6 736 aa4.69□□□□□ -1.66
CCDC88A-210ENST00000468534 SLC27A6Q9Y2P4 619 aa4.69□□□□□ -1.66
CCDC88A-210ENST00000468534 PPIL1Q9Y3C6 166 aa4.69□□□□□ -1.66
CCDC88A-210ENST00000468534 PFASO15067 1338 aa4.69□□□□□ -1.66
CCDC88A-210ENST00000468534 IGLV5-39A0A0G2JS06 123 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 C1orf232A0A0U1RR37 186 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 A0A1B0GUA9 196 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 GOLGA8IPA6NC78 632 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 A6NL46 340 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 J3KTA2 159 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 K7EQM0 130 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 HS3ST1O14792 307 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 XPO1O14980 1071 aaKnown RBP4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 SMAD9O15198 467 aaKnown RBP4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 ARHGEF9O43307 516 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 DHHO43323 396 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 USP12O75317 370 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 RPP40O75818 363 aaKnown RBP4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 CLPXO76031 633 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 SLC16A8O95907 504 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 PLAUP00749 431 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 APOA1P02647 267 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 ENO1P06733 434 aaKnown RBP4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 CD63P08962 238 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 ALOX5P09917 674 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 T-ENOLP0DO92 83 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 F3P13726 295 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 COX7A2P14406 83 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 DRD5P21918 477 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 MSNP26038 577 aaKnown RBP4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 FNTAP49354 379 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 RGS19P49795 217 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 GDI2P50395 445 aaKnown RBP4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 JAK3P52333 1124 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 TGM3Q08188 693 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 NIPAL4Q0D2K0 466 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 RASGEF1BQ0VAM2 473 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 GRIK3Q13003 919 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 NONOQ15233 471 aaKnown RBP eCLIP4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 C6orf136Q5SQH8 315 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 KRT79Q5XKE5 535 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 FAM91A1Q658Y4 838 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 BLOC1S2Q6QNY1 142 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 SLC24A5Q71RS6 500 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 EXOC3L1Q86VI1 746 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 ZDHHC21Q8IVQ6 265 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 PELI3Q8N2H9 469 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 COMMD1Q8N668 190 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 SPATA3Q8NHX4 192 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 B4GALNT2Q8NHY0 566 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 ANGPTL6Q8NI99 470 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 MITD1Q8WV92 249 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 WDR60Q8WVS4 1066 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 SELENOMQ8WWX9 145 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 RLN3Q8WXF3 142 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 MIB2Q96AX9 1013 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 OPTNQ96CV9 577 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 DTD2Q96FN9 168 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 ELMO2Q96JJ3 720 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 ZNF668Q96K58 619 aaPredicted RBP4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 C12orf66Q96MD2 445 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 KLHL5Q96PQ7 755 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 ZNF607Q96SK3 696 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 KCNS3Q9BQ31 491 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 BBS2Q9BXC9 721 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 OSGEPL1Q9H4B0 414 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 AKIRIN1Q9H9L7 192 aaPredicted RBP4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 ZBTB26Q9HCK0 441 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 ZDHHC18Q9NUE0 388 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 TMLHEQ9NVH6 421 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 LARSQ9P2J5 1176 aaKnown RBP4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 CRNNQ9UBG3 495 aaPredicted RBP4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 CYTH4Q9UIA0 394 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 VPS4AQ9UN37 437 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 PTCH1Q13635 1447 aa4.68□□□□□ -1.66
CCDC88A-210ENST00000468534 ADCY9O60503 1353 aa4.67□□□□□ -1.66
CCDC88A-210ENST00000468534 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms