RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 KCNAB2Q13303 367 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 SLC8B1Q6J4K2 584 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 ENPP6Q6UWR7 440 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 R3HCC1LQ7Z5L2 792 aaKnown RBP11.32□□□□□ -0.6
NPHP4-204ENST00000460696 THOC6Q86W42 341 aaKnown RBP11.32□□□□□ -0.6
NPHP4-204ENST00000460696 ADGRG5Q8IZF4 528 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 SVOPLQ8N434 492 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 CHST14Q8NCH0 376 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 VANGL1Q8TAA9 524 aaPredicted RBP11.32□□□□□ -0.6
NPHP4-204ENST00000460696 MAGEB10Q96LZ2 347 aaPredicted RBP11.32□□□□□ -0.6
NPHP4-204ENST00000460696 SEZ6LQ9BYH1 1024 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 TUBB1Q9H4B7 451 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 THG1LQ9NWX6 298 aaKnown RBP11.32□□□□□ -0.6
NPHP4-204ENST00000460696 H2AFY2Q9P0M6 372 aaPredicted RBP11.32□□□□□ -0.6
NPHP4-204ENST00000460696 PAIP2BQ9ULR5 123 aaKnown RBP11.32□□□□□ -0.6
NPHP4-204ENST00000460696 CDC14AQ9UNH5 594 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 PRKAB1Q9Y478 270 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 PRSS21Q9Y6M0 314 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 TCRBV3S1A0A5B6 114 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 PCDH7O60245 1069 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 LEFTY1O75610 366 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 SLC35G4P0C7Q5 338 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 PPIBP23284 216 aaKnown RBP11.31□□□□□ -0.6
NPHP4-204ENST00000460696 HNMTP50135 292 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 TRAF3Q13114 568 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 RGS21Q2M5E4 152 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 CRTC1Q6UUV9 634 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 SUSD1Q6UWL2 747 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 LRRC70Q7Z2Q7 622 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 CCDC103Q8IW40 242 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 PELI3Q8N2H9 469 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 GPR26Q8NDV2 337 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 PROKR1Q8TCW9 393 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 LINC01599Q8WXQ3 324 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 SLC29A3Q9BZD2 475 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 CEP44Q9C0F1 390 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 C1QTNF3-AMACRE9PGA6 284 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 WNT9AO14904 365 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 OR10H3O60404 316 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 UGT2B11O75310 529 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 ADH1CP00326 375 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 RPN2P04844 631 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 HLA-EP13747 358 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 CTSKP43235 329 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 DGKEP52429 567 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 SLBPQ14493 270 aaKnown RBP eCLIP11.31□□□□□ -0.6
NPHP4-204ENST00000460696 ATP6AP1Q15904 470 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 ZNF783Q6ZMS7 281 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 DEF8Q6ZN54 512 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 EIF3MQ7L2H7 374 aaKnown RBP11.31□□□□□ -0.6
NPHP4-204ENST00000460696 TRIM48Q8IWZ4 208 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 KIAA2013Q8IYS2 634 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 OR4K1Q8NGD4 311 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 XAGE5Q8WWM1 108 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 TEX37Q96LM6 180 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 KLF16Q9BXK1 252 aaPredicted RBP11.31□□□□□ -0.6
NPHP4-204ENST00000460696 OR51B5Q9H339 312 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 ZDHHC4Q9NPG8 344 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 FZD4Q9ULV1 537 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 MAPRE3Q9UPY8 281 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 CORO2BQ9UQ03 480 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 ANGPT4Q9Y264 503 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 MYO10Q9HD67 2058 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 RGS10O43665 173 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 PRAMEF12O95522 483 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 NPPAP01160 153 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 NR2F1P10589 423 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 ALOX12P18054 663 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 MAGP20916 626 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 PSMD8P48556 350 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 CDK9P50750 372 aaKnown RBP11.31□□□□□ -0.6
NPHP4-204ENST00000460696 MEF2AQ02078 507 aaPredicted RBP11.31□□□□□ -0.6
NPHP4-204ENST00000460696 ABHD18Q0P651 414 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 LSAMPQ13449 338 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 DEPDC1Q5TB30 811 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 TYW3Q6IPR3 259 aaKnown RBP11.31□□□□□ -0.6
NPHP4-204ENST00000460696 NOXRED1Q6NXP6 359 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 HS3ST5Q8IZT8 346 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 TMEM102Q8N9M5 508 aaPredicted RBP11.31□□□□□ -0.6
NPHP4-204ENST00000460696 KLK6Q92876 244 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 BORCS5Q969J3 196 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 GTPBP3Q969Y2 492 aaKnown RBP11.31□□□□□ -0.6
NPHP4-204ENST00000460696 EXOSC8Q96B26 276 aaKnown RBP11.31□□□□□ -0.6
NPHP4-204ENST00000460696 CCDC177Q9NQR7 707 aaPredicted RBP11.31□□□□□ -0.6
NPHP4-204ENST00000460696 ABCB10Q9NRK6 738 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 COQ6Q9Y2Z9 468 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 PCDHB3Q9Y5E6 796 aa11.31□□□□□ -0.6
NPHP4-204ENST00000460696 CARNS1A5YM72 827 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 J3QRK9 145 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 TSPAN6O43657 245 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 RASAL1O95294 804 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 KRT75O95678 551 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 PRNPP04156 253 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 EPCAMP16422 314 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 GRM2Q14416 872 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 MED22Q15528 200 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 BRAT1Q6PJG6 821 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 MTSS1LQ765P7 747 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 FAM124AQ86V42 546 aa11.3□□□□□ -0.6
NPHP4-204ENST00000460696 PSMA8Q8TAA3 256 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms