RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 HAS2Q92819 552 aa12.69□□□□□ -0.38
HMGB3-204ENST00000448905 MVB12AQ96EY5 273 aa12.69□□□□□ -0.38
HMGB3-204ENST00000448905 CABS1Q96KC9 395 aa12.69□□□□□ -0.38
HMGB3-204ENST00000448905 ZNF778Q96MU6 729 aa12.69□□□□□ -0.38
HMGB3-204ENST00000448905 BAG1Q99933 345 aaPredicted RBP12.69□□□□□ -0.38
HMGB3-204ENST00000448905 ZFYVE21Q9BQ24 234 aa12.69□□□□□ -0.38
HMGB3-204ENST00000448905 BFARQ9NZS9 450 aa12.69□□□□□ -0.38
HMGB3-204ENST00000448905 PAK5Q9P286 719 aa12.69□□□□□ -0.38
HMGB3-204ENST00000448905 COPG2Q9UBF2 871 aa12.69□□□□□ -0.38
HMGB3-204ENST00000448905 PACSIN2Q9UNF0 486 aaPredicted RBP12.69□□□□□ -0.38
HMGB3-204ENST00000448905 DRG1Q9Y295 367 aaKnown RBP12.69□□□□□ -0.38
HMGB3-204ENST00000448905 PCSK5Q92824 1860 aa12.69□□□□□ -0.38
HMGB3-204ENST00000448905 TCRBV7S2A1N4TA0A589 114 aa12.68□□□□□ -0.38
HMGB3-204ENST00000448905 ZNF839A8K0R7 811 aa12.68□□□□□ -0.38
HMGB3-204ENST00000448905 KLHL18O94889 574 aa12.68□□□□□ -0.38
HMGB3-204ENST00000448905 BMP10O95393 424 aa12.68□□□□□ -0.38
HMGB3-204ENST00000448905 CRYABP02511 175 aaKnown RBP12.68□□□□□ -0.38
HMGB3-204ENST00000448905 SERPINA7P05543 415 aa12.68□□□□□ -0.38
HMGB3-204ENST00000448905 HEXBP07686 556 aa12.68□□□□□ -0.38
HMGB3-204ENST00000448905 ANXA5P08758 320 aa12.68□□□□□ -0.38
HMGB3-204ENST00000448905 TNFRSF8P28908 595 aa12.68□□□□□ -0.38
HMGB3-204ENST00000448905 GRIA1P42261 906 aa12.68□□□□□ -0.38
HMGB3-204ENST00000448905 INAQ16352 499 aa12.68□□□□□ -0.38
HMGB3-204ENST00000448905 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.68□□□□□ -0.386e-7■■□□□ 14.3
HMGB3-204ENST00000448905 ANKRD20A4Q4UJ75 823 aa12.68□□□□□ -0.38
HMGB3-204ENST00000448905 FBXO42Q6P3S6 717 aa12.68□□□□□ -0.38
HMGB3-204ENST00000448905 MTFR2Q6P444 385 aa12.68□□□□□ -0.38
HMGB3-204ENST00000448905 RAD9BQ6WBX8 426 aa12.68□□□□□ -0.38
HMGB3-204ENST00000448905 LDB1Q86U70 411 aaPredicted RBP12.68□□□□□ -0.38
HMGB3-204ENST00000448905 RNF10Q8N5U6 811 aaKnown RBP12.68□□□□□ -0.38
HMGB3-204ENST00000448905 OTUD6BQ8N6M0 293 aa12.68□□□□□ -0.38
HMGB3-204ENST00000448905 OR2A1Q8NGT9 310 aa12.68□□□□□ -0.38
HMGB3-204ENST00000448905 ATG4AQ8WYN0 398 aa12.68□□□□□ -0.38
HMGB3-204ENST00000448905 RELTQ969Z4 430 aa12.68□□□□□ -0.38
HMGB3-204ENST00000448905 RERGQ96A58 199 aaPredicted RBP12.68□□□□□ -0.38
HMGB3-204ENST00000448905 MARVELD3Q96A59 401 aa12.68□□□□□ -0.38
HMGB3-204ENST00000448905 HES6Q96HZ4 224 aa12.68□□□□□ -0.38
HMGB3-204ENST00000448905 TCF12Q99081 682 aa12.68□□□□□ -0.38
HMGB3-204ENST00000448905 DPH7Q9BTV6 452 aa12.68□□□□□ -0.38
HMGB3-204ENST00000448905 IL22Q9GZX6 179 aa12.68□□□□□ -0.38
HMGB3-204ENST00000448905 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.68□□□□□ -0.381e-6■■■■□ 25.2
HMGB3-204ENST00000448905 FAM114A2Q9NRY5 505 aa12.68□□□□□ -0.38
HMGB3-204ENST00000448905 SPATA7Q9P0W8 599 aa12.68□□□□□ -0.38
HMGB3-204ENST00000448905 PTGFRNQ9P2B2 879 aa12.68□□□□□ -0.38
HMGB3-204ENST00000448905 TRPC4Q9UBN4 977 aa12.68□□□□□ -0.38
HMGB3-204ENST00000448905 SUCOQ9UBS9 1254 aaKnown RBP12.68□□□□□ -0.38
HMGB3-204ENST00000448905 TEKT2Q9UIF3 430 aa12.68□□□□□ -0.38
HMGB3-204ENST00000448905 REXO2Q9Y3B8 237 aaKnown RBP12.68□□□□□ -0.38
HMGB3-204ENST00000448905 SPTBP11277 2137 aa12.68□□□□□ -0.38
HMGB3-204ENST00000448905 UNC79Q9P2D8 2635 aa12.68□□□□□ -0.38
HMGB3-204ENST00000448905 LOC105369274A0A096LPK9 316 aa12.67□□□□□ -0.38
HMGB3-204ENST00000448905 LOC102723532A0A0G2JNH3 316 aa12.67□□□□□ -0.38
HMGB3-204ENST00000448905 ARHGAP10A1A4S6 786 aa12.67□□□□□ -0.38
HMGB3-204ENST00000448905 ZG16O60844 167 aa12.67□□□□□ -0.38
HMGB3-204ENST00000448905 PRR35P0CG20 571 aa12.67□□□□□ -0.38
HMGB3-204ENST00000448905 CHRM3P20309 590 aa12.67□□□□□ -0.38
HMGB3-204ENST00000448905 RPS3P23396 243 aaKnown RBP eCLIP12.67□□□□□ -0.38
HMGB3-204ENST00000448905 ELAVL4P26378 380 aaKnown RBP12.67□□□□□ -0.38
HMGB3-204ENST00000448905 RPA3P35244 121 aaPredicted RBP12.67□□□□□ -0.38
HMGB3-204ENST00000448905 SESN2P58004 480 aaPredicted RBP12.67□□□□□ -0.38
HMGB3-204ENST00000448905 Q0VFX4 171 aa12.67□□□□□ -0.38
HMGB3-204ENST00000448905 SEMA3AQ14563 771 aa12.67□□□□□ -0.38
HMGB3-204ENST00000448905 VWA2Q5GFL6 755 aa12.67□□□□□ -0.38
HMGB3-204ENST00000448905 RNF187Q5TA31 235 aaPredicted RBP12.67□□□□□ -0.38
HMGB3-204ENST00000448905 GARNL3Q5VVW2 1013 aa12.67□□□□□ -0.38
HMGB3-204ENST00000448905 FRMPD2BQ6IN97 320 aa12.67□□□□□ -0.38
HMGB3-204ENST00000448905 CNSTQ6PJW8 725 aa12.67□□□□□ -0.38
HMGB3-204ENST00000448905 TMEM207Q6UWW9 146 aa12.67□□□□□ -0.38
HMGB3-204ENST00000448905 RIPOR1Q6ZS17 1223 aa12.67□□□□□ -0.38
HMGB3-204ENST00000448905 FJX1Q86VR8 437 aa12.67□□□□□ -0.38
HMGB3-204ENST00000448905 TMEM151BQ8IW70 566 aa12.67□□□□□ -0.38
HMGB3-204ENST00000448905 OR4N4Q8N0Y3 316 aa12.67□□□□□ -0.38
HMGB3-204ENST00000448905 ACRBPQ8NEB7 543 aa12.67□□□□□ -0.38
HMGB3-204ENST00000448905 DNAJB8Q8NHS0 232 aa12.67□□□□□ -0.38
HMGB3-204ENST00000448905 SMPDL3AQ92484 453 aa12.67□□□□□ -0.38
HMGB3-204ENST00000448905 SLX1AQ9BQ83 275 aa12.67□□□□□ -0.38
HMGB3-204ENST00000448905 TSGA10Q9BZW7 698 aa12.67□□□□□ -0.38
HMGB3-204ENST00000448905 P2RY12Q9H244 342 aa12.67□□□□□ -0.38
HMGB3-204ENST00000448905 MRPS30Q9NP92 439 aaKnown RBP12.67□□□□□ -0.38
HMGB3-204ENST00000448905 C14orf105Q9NVL8 296 aa12.67□□□□□ -0.38
HMGB3-204ENST00000448905 STMN3Q9NZ72 180 aa12.67□□□□□ -0.38
HMGB3-204ENST00000448905 SPTBN1Q01082 2364 aaKnown RBP12.67□□□□□ -0.38
HMGB3-204ENST00000448905 CCDC88CQ9P219 2028 aa12.67□□□□□ -0.38
HMGB3-204ENST00000448905 SPTAN1Q13813 2472 aaKnown RBP12.67□□□□□ -0.38
HMGB3-204ENST00000448905 IGLV3-12A0A075B6K2 115 aa12.66□□□□□ -0.38
HMGB3-204ENST00000448905 IDSB3KWA1 339 aa12.66□□□□□ -0.38
HMGB3-204ENST00000448905 PRSS44E7EML9 344 aa12.66□□□□□ -0.38
HMGB3-204ENST00000448905 H0YGG7 62 aa12.66□□□□□ -0.38
HMGB3-204ENST00000448905 CCNDBP1O95273 360 aa12.66□□□□□ -0.38
HMGB3-204ENST00000448905 ESR1P03372 595 aa12.66□□□□□ -0.38
HMGB3-204ENST00000448905 FMO4P31512 558 aa12.66□□□□□ -0.38
HMGB3-204ENST00000448905 TNFSF10P50591 281 aa12.66□□□□□ -0.38
HMGB3-204ENST00000448905 ZNF75DP51815 510 aa12.66□□□□□ -0.38
HMGB3-204ENST00000448905 CASP6P55212 293 aa12.66□□□□□ -0.38
HMGB3-204ENST00000448905 EIF3BP55884 814 aaKnown RBP12.66□□□□□ -0.38
HMGB3-204ENST00000448905 ARF3P61204 181 aaPredicted RBP12.66□□□□□ -0.38
HMGB3-204ENST00000448905 RBPJQ06330 500 aa12.66□□□□□ -0.38
HMGB3-204ENST00000448905 ART3Q13508 389 aa12.66□□□□□ -0.38
HMGB3-204ENST00000448905 SNX1Q13596 522 aa12.66□□□□□ -0.38
HMGB3-204ENST00000448905 DSG2Q14126 1118 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms