RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 TRIB3Q96RU7 358 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 CADM1Q9BY67 442 aaKnown RBP7.2□□□□□ -1.26
SYNE1-213ENST00000448038 S100A14Q9HCY8 104 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 ZIM2Q9NZV7 527 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 CDC14AQ9UNH5 594 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 TMED5Q9Y3A6 229 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 NME7Q9Y5B8 376 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 GJB3O75712 270 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 BMP7P18075 431 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 MYL12AP19105 171 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 CSNK2A2P19784 350 aaPredicted RBP7.2□□□□□ -1.26
SYNE1-213ENST00000448038 CSNK1DP48730 415 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 DGKQP52824 942 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 RAB8AP61006 207 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 ZNF789Q5FWF6 425 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 PARS2Q7L3T8 475 aaKnown RBP7.2□□□□□ -1.26
SYNE1-213ENST00000448038 ARMC8Q8IUR7 673 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 NPAS3Q8IXF0 933 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 SVOPQ8N4V2 548 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 DPP10Q8N608 796 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 GPR26Q8NDV2 337 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 SETD7Q8WTS6 366 aaKnown RBP7.2□□□□□ -1.26
SYNE1-213ENST00000448038 PIGKQ92643 395 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 NELL2Q99435 816 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 MKS1Q9NXB0 559 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 LHX3Q9UBR4 397 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 NUMBLQ9Y6R0 609 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 G3V2T6 193 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 SCELO95171 688 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 NCK1P16333 377 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 GGT5P36269 586 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 RPL4P36578 427 aaKnown RBP7.2□□□□□ -1.26
SYNE1-213ENST00000448038 TRIM25Q14258 630 aaKnown RBP7.2□□□□□ -1.26
SYNE1-213ENST00000448038 MTX3Q5HYI7 312 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 OR4F3Q6IEY1 312 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 PLEKHM3Q6ZWE6 761 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 DNAJB8Q8NHS0 232 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 ZNF563Q8TA94 476 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 GRIP2Q9C0E4 1043 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 EXO5Q9H790 373 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 TMEM30AQ9NV96 361 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 NDUFA13Q9P0J0 144 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 MAP10Q9P2G4 905 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 APOBEC3BQ9UH17 382 aaKnown RBP7.2□□□□□ -1.26
SYNE1-213ENST00000448038 KLHL33A6NCF5 533 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 CHURC1-FNTBB4DL54 471 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 PSMD11O00231 422 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 UGT2B17O75795 530 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 GBAP04062 536 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 LAMP2P13473 410 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 TIMP2P16035 220 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 SEPHS1P49903 392 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 NFE2L1Q14494 772 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 HERC3Q15034 1050 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 EGFLAMQ63HQ2 1017 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 ZNF544Q6NX49 715 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 TNFAIP8L2Q6P589 184 aaPredicted RBP7.2□□□□□ -1.26
SYNE1-213ENST00000448038 HSD11B1LQ7Z5J1 315 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 PACS2Q86VP3 889 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 ADAP2Q9NPF8 381 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 ZCCHC3Q9NUD5 404 aaKnown RBP7.2□□□□□ -1.26
SYNE1-213ENST00000448038 SUCOQ9UBS9 1254 aaKnown RBP7.2□□□□□ -1.26
SYNE1-213ENST00000448038 COPS7AQ9UBW8 275 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 OR5K4A6NMS3 321 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 SCN2BO60939 215 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 MT-ND1P03886 318 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 ASGR2P07307 311 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 G6PDP11413 515 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 UFM1P61960 85 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 OR4D1Q15615 310 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 NEDD8Q15843 81 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 DPPA4Q7L190 304 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 NSMCE3Q96MG7 304 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 IL17FQ96PD4 163 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 SMIM14Q96QK8 99 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 EPS8L2Q9H6S3 715 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 MVB12BQ9H7P6 319 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 ARNT2Q9HBZ2 717 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 CALML5Q9NZT1 146 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 GIMAP2Q9UG22 337 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 IKZF3Q9UKT9 509 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 SCN4AP35499 1836 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 ERN1O75460 977 aaKnown RBP7.19□□□□□ -1.26
SYNE1-213ENST00000448038 MYCLP1P12525 358 aaPredicted RBP7.19□□□□□ -1.26
SYNE1-213ENST00000448038 HNRNPA2B1P22626 353 aaKnown RBP7.19□□□□□ -1.26
SYNE1-213ENST00000448038 CASP9P55211 416 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 RGS8P57771 180 aaPredicted RBP7.19□□□□□ -1.26
SYNE1-213ENST00000448038 GSTM4Q03013 218 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 NR1D2Q14995 579 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 SLC14A2Q15849 920 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 UNC50Q53HI1 259 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 C9orf50Q5SZB4 431 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 UBAP2Q5T6F2 1119 aaKnown RBP7.19□□□□□ -1.26
SYNE1-213ENST00000448038 LIPIQ6XZB0 460 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 GPR149Q86SP6 731 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 TMIEQ8NEW7 156 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 OR9I1Q8NGQ6 314 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 JPH3Q8WXH2 748 aaPredicted RBP7.19□□□□□ -1.26
SYNE1-213ENST00000448038 ZNF689Q96CS4 500 aaPredicted RBP7.19□□□□□ -1.26
SYNE1-213ENST00000448038 MOCOSQ96EN8 888 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms