RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 FKBP9O95302 570 aa13.86□□□□□ -0.19
SDC1-204ENST00000429035 RPS3P23396 243 aaKnown RBP eCLIP13.86□□□□□ -0.191e-10■■■□□ 18.1
SDC1-204ENST00000429035 DCTP40126 519 aa13.86□□□□□ -0.19
SDC1-204ENST00000429035 CCNFP41002 786 aa13.86□□□□□ -0.19
SDC1-204ENST00000429035 VPS41P49754 854 aa13.86□□□□□ -0.19
SDC1-204ENST00000429035 SOX8P57073 446 aa13.86□□□□□ -0.19
SDC1-204ENST00000429035 EEF1A2Q05639 463 aaKnown RBP13.86□□□□□ -0.19
SDC1-204ENST00000429035 KLC1Q07866 573 aa13.86□□□□□ -0.19
SDC1-204ENST00000429035 RPS6KA1Q15418 735 aa13.86□□□□□ -0.19
SDC1-204ENST00000429035 FAM180AQ6UWF9 173 aa13.86□□□□□ -0.19
SDC1-204ENST00000429035 SUSD1Q6UWL2 747 aa13.86□□□□□ -0.19
SDC1-204ENST00000429035 RNF44Q7L0R7 432 aa13.86□□□□□ -0.19
SDC1-204ENST00000429035 OR4N4Q8N0Y3 316 aa13.86□□□□□ -0.19
SDC1-204ENST00000429035 MPP5Q8N3R9 675 aa13.86□□□□□ -0.19
SDC1-204ENST00000429035 RNF10Q8N5U6 811 aaKnown RBP13.86□□□□□ -0.19
SDC1-204ENST00000429035 OR11G2Q8NGC1 345 aa13.86□□□□□ -0.19
SDC1-204ENST00000429035 STT3BQ8TCJ2 826 aa13.86□□□□□ -0.19
SDC1-204ENST00000429035 GRHL3Q8TE85 626 aa13.86□□□□□ -0.19
SDC1-204ENST00000429035 ZUFSPQ96AP4 578 aa13.86□□□□□ -0.19
SDC1-204ENST00000429035 MFSD3Q96ES6 412 aa13.86□□□□□ -0.19
SDC1-204ENST00000429035 ZFYVE21Q9BQ24 234 aa13.86□□□□□ -0.19
SDC1-204ENST00000429035 MESP1Q9BRJ9 268 aa13.86□□□□□ -0.19
SDC1-204ENST00000429035 SLC26A1Q9H2B4 701 aa13.86□□□□□ -0.19
SDC1-204ENST00000429035 EIF2B3Q9NR50 452 aaKnown RBP13.86□□□□□ -0.19
SDC1-204ENST00000429035 TREX1Q9NSU2 369 aa13.86□□□□□ -0.19
SDC1-204ENST00000429035 IL1RAPL1Q9NZN1 696 aa13.86□□□□□ -0.19
SDC1-204ENST00000429035 ZNF282Q9UDV7 671 aaPredicted RBP13.86□□□□□ -0.19
SDC1-204ENST00000429035 C3orf18Q9UK00 162 aa13.86□□□□□ -0.19
SDC1-204ENST00000429035 DOPEY1Q5JWR5 2465 aa13.86□□□□□ -0.19
SDC1-204ENST00000429035 FITM1A5D6W6 292 aa13.85□□□□□ -0.19
SDC1-204ENST00000429035 TARM1B6A8C7 271 aa13.85□□□□□ -0.19
SDC1-204ENST00000429035 PFDN6O15212 129 aa13.85□□□□□ -0.19
SDC1-204ENST00000429035 PRICKLE3O43900 615 aaPredicted RBP13.85□□□□□ -0.19
SDC1-204ENST00000429035 VPS26AO75436 327 aa13.85□□□□□ -0.19
SDC1-204ENST00000429035 ZGLP1P0C6A0 271 aa13.85□□□□□ -0.19
SDC1-204ENST00000429035 CHRM3P20309 590 aa13.85□□□□□ -0.19
SDC1-204ENST00000429035 RPA3P35244 121 aaPredicted RBP13.85□□□□□ -0.19
SDC1-204ENST00000429035 CARSP49589 748 aaKnown RBP13.85□□□□□ -0.19
SDC1-204ENST00000429035 ARG2P78540 354 aa13.85□□□□□ -0.19
SDC1-204ENST00000429035 MUM1Q2TAK8 710 aa13.85□□□□□ -0.19
SDC1-204ENST00000429035 FAAH2Q6GMR7 532 aa13.85□□□□□ -0.19
SDC1-204ENST00000429035 MRNIPQ6NTE8 343 aa13.85□□□□□ -0.19
SDC1-204ENST00000429035 CASC4Q6P4E1 433 aa13.85□□□□□ -0.19
SDC1-204ENST00000429035 ADCK2Q7Z695 626 aa13.85□□□□□ -0.19
SDC1-204ENST00000429035 SDCCAG8Q86SQ7 713 aaPredicted RBP13.85□□□□□ -0.19
SDC1-204ENST00000429035 ST6GALNAC3Q8NDV1 305 aa13.85□□□□□ -0.19
SDC1-204ENST00000429035 NACC2Q96BF6 587 aa13.85□□□□□ -0.19
SDC1-204ENST00000429035 ZNF285Q96NJ3 590 aa13.85□□□□□ -0.19
SDC1-204ENST00000429035 DPH7Q9BTV6 452 aa13.85□□□□□ -0.19
SDC1-204ENST00000429035 MRPS30Q9NP92 439 aaKnown RBP13.85□□□□□ -0.19
SDC1-204ENST00000429035 OSGIN2Q9Y236 505 aa13.85□□□□□ -0.19
SDC1-204ENST00000429035 CRYL1Q9Y2S2 319 aa13.85□□□□□ -0.19
SDC1-204ENST00000429035 UNC79Q9P2D8 2635 aa13.85□□□□□ -0.19
SDC1-204ENST00000429035 NSG1A0A0A6YYJ2 146 aa13.84□□□□□ -0.19
SDC1-204ENST00000429035 A0A1W2PPV9 198 aa13.84□□□□□ -0.19
SDC1-204ENST00000429035 ARHGEF33A8MVX0 844 aa13.84□□□□□ -0.19
SDC1-204ENST00000429035 AP3B1O00203 1094 aa13.84□□□□□ -0.19
SDC1-204ENST00000429035 E2F3O00716 465 aa13.84□□□□□ -0.19
SDC1-204ENST00000429035 SRPX2O60687 465 aaPredicted RBP13.84□□□□□ -0.19
SDC1-204ENST00000429035 SYF2O95926 243 aaKnown RBP13.84□□□□□ -0.19
SDC1-204ENST00000429035 HPP00738 406 aa13.84□□□□□ -0.19
SDC1-204ENST00000429035 F7P08709 466 aaPredicted RBP13.84□□□□□ -0.19
SDC1-204ENST00000429035 TSFMP43897 325 aaKnown RBP13.84□□□□□ -0.19
SDC1-204ENST00000429035 KCNJ1P48048 391 aa13.84□□□□□ -0.19
SDC1-204ENST00000429035 YBX1P67809 324 aaKnown RBP13.84□□□□□ -0.19
SDC1-204ENST00000429035 Q0VFX4 171 aa13.84□□□□□ -0.19
SDC1-204ENST00000429035 NAA25Q14CX7 972 aa13.84□□□□□ -0.19
SDC1-204ENST00000429035 TLR1Q15399 786 aa13.84□□□□□ -0.19
SDC1-204ENST00000429035 TRIP13Q15645 432 aaPredicted RBP13.84□□□□□ -0.19
SDC1-204ENST00000429035 VWA2Q5GFL6 755 aa13.84□□□□□ -0.19
SDC1-204ENST00000429035 CRB2Q5IJ48 1285 aa13.84□□□□□ -0.19
SDC1-204ENST00000429035 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.84□□□□□ -0.19
SDC1-204ENST00000429035 RNF187Q5TA31 235 aaPredicted RBP13.84□□□□□ -0.19
SDC1-204ENST00000429035 PRMT9Q6P2P2 845 aa13.84□□□□□ -0.19
SDC1-204ENST00000429035 ISLR2Q6UXK2 745 aa13.84□□□□□ -0.19
SDC1-204ENST00000429035 KCNMB4Q86W47 210 aa13.84□□□□□ -0.19
SDC1-204ENST00000429035 CSNK1A1LQ8N752 337 aa13.84□□□□□ -0.19
SDC1-204ENST00000429035 OR2A1Q8NGT9 310 aa13.84□□□□□ -0.19
SDC1-204ENST00000429035 OR9A1PQ8NGU1 263 aa13.84□□□□□ -0.19
SDC1-204ENST00000429035 COG1Q8WTW3 980 aa13.84□□□□□ -0.19
SDC1-204ENST00000429035 LPGAT1Q92604 370 aa13.84□□□□□ -0.19
SDC1-204ENST00000429035 C10orf90Q96M02 699 aa13.84□□□□□ -0.19
SDC1-204ENST00000429035 PTGFRNQ9P2B2 879 aa13.84□□□□□ -0.19
SDC1-204ENST00000429035 TRPC4Q9UBN4 977 aa13.84□□□□□ -0.19
SDC1-204ENST00000429035 TAC3Q9UHF0 121 aa13.84□□□□□ -0.19
SDC1-204ENST00000429035 CPAMD8Q8IZJ3 1885 aa13.84□□□□□ -0.19
SDC1-204ENST00000429035 TEX15Q9BXT5 2789 aa13.83□□□□□ -0.19
SDC1-204ENST00000429035 OR2A25A4D2G3 310 aa13.83□□□□□ -0.2
SDC1-204ENST00000429035 VSTM2BA6NLU5 285 aa13.83□□□□□ -0.2
SDC1-204ENST00000429035 H0YGG7 62 aa13.83□□□□□ -0.2
SDC1-204ENST00000429035 H3BMM5 538 aa13.83□□□□□ -0.2
SDC1-204ENST00000429035 ONECUT2O95948 504 aa13.83□□□□□ -0.2
SDC1-204ENST00000429035 F10P00742 488 aa13.83□□□□□ -0.2
SDC1-204ENST00000429035 FGGP02679 453 aa13.83□□□□□ -0.2
SDC1-204ENST00000429035 CATP04040 527 aaKnown RBP13.83□□□□□ -0.2
SDC1-204ENST00000429035 ANXA5P08758 320 aa13.83□□□□□ -0.2
SDC1-204ENST00000429035 CXCR2P25025 360 aa13.83□□□□□ -0.2
SDC1-204ENST00000429035 ARNTP27540 789 aa13.83□□□□□ -0.2
SDC1-204ENST00000429035 NPY2RP49146 381 aa13.83□□□□□ -0.2
SDC1-204ENST00000429035 PER3P56645 1201 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms