RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 TMEM185BQ9H7F4 350 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 FAM86B2P0C5J1 330 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 LUMP51884 338 aaPredicted RBP12.61□□□□□ -0.39
COL6A3-206ENST00000409809 ARSFP54793 590 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 ABRAXAS2Q15018 415 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 FAM69AQ5T7M9 428 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 HACD2Q6Y1H2 254 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 SSX9Q7RTT3 188 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 PCSK9Q8NBP7 692 aaKnown RBP12.61□□□□□ -0.39
COL6A3-206ENST00000409809 RNF32Q9H0A6 362 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 MGAT4CQ9UBM8 478 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 PCDHB5Q9Y5E4 795 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 ATRNO75882 1429 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 SHROOM3Q8TF72 1996 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 SOBPA7XYQ1 873 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 H7C1Q1 480 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 CKBP12277 381 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 TPT1P13693 172 aaKnown RBP12.61□□□□□ -0.39
COL6A3-206ENST00000409809 PPATQ06203 517 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 XKR5Q6UX68 686 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 PARK7Q99497 189 aaKnown RBP12.61□□□□□ -0.39
COL6A3-206ENST00000409809 ANKMY1Q9P2S6 941 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 A0A1W2PPW3 197 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 CNTN5O94779 1100 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 IFNA5P01569 189 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 ZNF20P17024 532 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 PBLDP30039 288 aaPredicted RBP12.61□□□□□ -0.39
COL6A3-206ENST00000409809 CDKN2BP42772 138 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 NFATC3Q12968 1075 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 IKBKEQ14164 716 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 TEX44Q53QW1 395 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 HECTD2Q5U5R9 776 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 PRSS48Q7RTY5 328 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 SMIM15Q7Z3B0 74 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 ILDR1Q86SU0 546 aaPredicted RBP12.61□□□□□ -0.39
COL6A3-206ENST00000409809 HACL1Q9UJ83 578 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 FAM149AA5PLN7 773 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 BOLA2-SMG1P6H3BVE0 249 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 IL1BP01584 269 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 CPSF6Q16630 551 aaKnown RBP eCLIP12.6□□□□□ -0.39
COL6A3-206ENST00000409809 ANKRD54Q6NXT1 300 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 ZNF627Q7L945 461 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 LNX2Q8N448 690 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 NIPA2Q8N8Q9 360 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 ELP5Q8TE02 316 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 CHPT1Q8WUD6 406 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 CNOT9Q92600 299 aaKnown RBP12.6□□□□□ -0.39
COL6A3-206ENST00000409809 UROC1Q96N76 676 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 SLC29A3Q9BZD2 475 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 GPATCH2LQ9NWQ4 482 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 PCDHGA8Q9Y5G5 932 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 SLC34A2O95436 690 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 C22orf31O95567 290 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 TLR1Q15399 786 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 SLC27A1Q6PCB7 646 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 RALGPS2Q86X27 583 aaPredicted RBP12.6□□□□□ -0.39
COL6A3-206ENST00000409809 TMEM169Q96HH4 297 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 HEPHQ9BQS7 1158 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 TECPR2O15040 1411 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 RBMXP38159 391 aaKnown RBP12.6□□□□□ -0.39
COL6A3-206ENST00000409809 GRK6P43250 576 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 DGKGP49619 791 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 SPP2Q13103 211 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 ATAD3CQ5T2N8 411 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 PLD6Q8N2A8 252 aaKnown RBP12.6□□□□□ -0.39
COL6A3-206ENST00000409809 PYURFQ96I23 114 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 POP1Q99575 1024 aaKnown RBP12.6□□□□□ -0.39
COL6A3-206ENST00000409809 COPS8Q99627 209 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 TTYH2Q9BSA4 534 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 AARSD1Q9BTE6 412 aaKnown RBP12.6□□□□□ -0.39
COL6A3-206ENST00000409809 TMLHEQ9NVH6 421 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 SCAF4O95104 1147 aaKnown RBP12.6□□□□□ -0.39
COL6A3-206ENST00000409809 CDRT1O95170 752 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 H1F0P07305 194 aaKnown RBP12.6□□□□□ -0.39
COL6A3-206ENST00000409809 DDX6P26196 483 aaKnown RBP eCLIP12.6□□□□□ -0.39
COL6A3-206ENST00000409809 PCDH1Q08174 1060 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 KRBOX4Q5JUW0 171 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 HSDL2Q6YN16 418 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 CAND1Q86VP6 1230 aaKnown RBP12.6□□□□□ -0.39
COL6A3-206ENST00000409809 NEIL3Q8TAT5 605 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 ZNF419Q96HQ0 510 aaPredicted RBP12.6□□□□□ -0.39
COL6A3-206ENST00000409809 SNRNP25Q9BV90 132 aaKnown RBP12.6□□□□□ -0.39
COL6A3-206ENST00000409809 THG1LQ9NWX6 298 aaKnown RBP12.6□□□□□ -0.39
COL6A3-206ENST00000409809 PTCH2Q9Y6C5 1203 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 A6NHS1 94 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 INPPL1O15357 1258 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 VSX2P58304 361 aaPredicted RBP12.6□□□□□ -0.39
COL6A3-206ENST00000409809 TAS2R50P59544 299 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 KCNC4Q03721 635 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 GAS6Q14393 721 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 TSTQ16762 297 aaKnown RBP12.6□□□□□ -0.39
COL6A3-206ENST00000409809 SLC35F1Q5T1Q4 408 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 ZNF563Q8TA94 476 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 LGALS12Q96DT0 336 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 NLGN3Q9NZ94 848 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 RHPN2P1A8MT19 583 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 MT-CO2P00403 227 aa12.6□□□□□ -0.39
COL6A3-206ENST00000409809 WDR55Q9H6Y2 383 aaPredicted RBP12.6□□□□□ -0.39
COL6A3-206ENST00000409809 RP1L1Q8IWN7 2480 aaPredicted RBP12.6□□□□□ -0.39
COL6A3-206ENST00000409809 AGAP14A8MT82 685 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms