RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 KCNC2Q96PR1 638 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 PHOX2BQ99453 314 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 FANCFQ9NPI8 374 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 STOML2Q9UJZ1 356 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 ABCB7O75027 752 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 SCO1O75880 301 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 CHI3L1P36222 383 aaPredicted RBP11.65□□□□□ -0.54
HMGB1-206ENST00000405805 CAPZA2P47755 286 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 RPIAP49247 311 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 FKBP1BP68106 108 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 ZXDBP98169 803 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 BNC1Q01954 994 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 SMN1Q16637 294 aaKnown RBP11.65□□□□□ -0.54
HMGB1-206ENST00000405805 UPP1Q16831 310 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 GOLGA7Q7Z5G4 137 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 DSG4Q86SJ6 1040 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 LRRC17Q8N6Y2 441 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 PACRGLQ8N7B6 248 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 ABHD11Q8NFV4 315 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 FUBP1Q96AE4 644 aaKnown RBP11.65□□□□□ -0.54
HMGB1-206ENST00000405805 EFHD2Q96C19 240 aaPredicted RBP11.65□□□□□ -0.54
HMGB1-206ENST00000405805 KCNS3Q9BQ31 491 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 DPH2Q9BQC3 489 aaPredicted RBP11.65□□□□□ -0.54
HMGB1-206ENST00000405805 UTS2RQ9UKP6 389 aa11.65□□□□□ -0.54
HMGB1-206ENST00000405805 MUSKO15146 869 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 LDB2O43679 373 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 HPCAL1P37235 193 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 MAGEA12P43365 314 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 CYP4F8P98187 520 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 USF2Q15853 346 aaPredicted RBP11.64□□□□□ -0.55
HMGB1-206ENST00000405805 BTBD16Q32M84 506 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 ZNF605Q86T29 641 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 TRUB1Q8WWH5 349 aaKnown RBP11.64□□□□□ -0.55
HMGB1-206ENST00000405805 TRIT1Q9H3H1 467 aaKnown RBP11.64□□□□□ -0.55
HMGB1-206ENST00000405805 AIG1Q9NVV5 245 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 LCHNA4D1U4 455 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 CHURC1-FNTBB4DL54 471 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 PDPK1O15530 556 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 DYRK3O43781 588 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 RGRP47804 291 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 HLCSP50747 726 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 SF1Q15637 639 aaKnown RBP11.64□□□□□ -0.55
HMGB1-206ENST00000405805 ATP6AP1Q15904 470 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 PARP15Q460N3 678 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 CYBRD1Q53TN4 286 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 LCN8Q6JVE9 175 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 KDELC1Q6UW63 502 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 DPY19L3Q6ZPD9 716 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 ANKRD13BQ86YJ7 626 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 CHCHD4Q8N4Q1 142 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 LINC01465Q8N7H1 131 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 PCSK9Q8NBP7 692 aaKnown RBP11.64□□□□□ -0.55
HMGB1-206ENST00000405805 ZNF419Q96HQ0 510 aaPredicted RBP11.64□□□□□ -0.55
HMGB1-206ENST00000405805 OSER1Q9NX31 292 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 ZNF624Q9P2J8 865 aaPredicted RBP11.64□□□□□ -0.55
HMGB1-206ENST00000405805 DNMT3LQ9UJW3 386 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 TLR6Q9Y2C9 796 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 OR2AG2A6NM03 316 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 SAP18O00422 153 aaKnown RBP11.64□□□□□ -0.55
HMGB1-206ENST00000405805 AIREO43918 545 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 PQBP1O60828 265 aaKnown RBP11.64□□□□□ -0.55
HMGB1-206ENST00000405805 BCAS1O75363 584 aaPredicted RBP11.64□□□□□ -0.55
HMGB1-206ENST00000405805 CREG1O75629 220 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 CHRNA1P02708 482 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 TSPAN19P0C672 248 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 FSHRP23945 695 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 GATMP50440 423 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 SPCS2Q15005 226 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 SLC36A3Q495N2 470 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 ANKS3Q6ZW76 656 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 VTCN1Q7Z7D3 282 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 BPHLQ86WA6 291 aaPredicted RBP11.64□□□□□ -0.55
HMGB1-206ENST00000405805 SVOPQ8N4V2 548 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 PDPRQ8NCN5 879 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 KLHDC9Q8NEP7 349 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 SNAPC3Q92966 411 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 NT5C3BQ969T7 300 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 BIRC8Q96P09 236 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 BOCQ9BWV1 1114 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 ZFYVE1Q9HBF4 777 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 ARMC1Q9NVT9 282 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 KLHL3Q9UH77 587 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 CORINQ9Y5Q5 1042 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 GSTM1P09488 218 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 KIR3DL1P43629 444 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 XKR6Q5GH73 641 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 UBE2R2Q712K3 238 aaPredicted RBP11.64□□□□□ -0.55
HMGB1-206ENST00000405805 CHMP1BQ7LBR1 199 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 PELI3Q8N2H9 469 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 TMEM151AQ8N4L1 468 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 LEMD2Q8NC56 503 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 HMGCLL1Q8TB92 370 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 RPL3LQ92901 407 aaKnown RBP11.64□□□□□ -0.55
HMGB1-206ENST00000405805 ZNF347Q96SE7 839 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 FAM118AQ9NWS6 357 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 THG1LQ9NWX6 298 aaKnown RBP11.64□□□□□ -0.55
HMGB1-206ENST00000405805 CD300AQ9UGN4 299 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 PADI4Q9UM07 663 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 ASB1Q9Y576 335 aa11.64□□□□□ -0.55
HMGB1-206ENST00000405805 OAS3Q9Y6K5 1087 aaKnown RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms