RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 IRF8Q02556 426 aa17.43■□□□□ 0.38
SDC1-203ENST00000403076 CHIT1Q13231 466 aa17.43■□□□□ 0.38
SDC1-203ENST00000403076 XKR6Q5GH73 641 aa17.43■□□□□ 0.38
SDC1-203ENST00000403076 PERM1Q5SV97 790 aa17.43■□□□□ 0.38
SDC1-203ENST00000403076 NKAIN2Q5VXU1 208 aa17.43■□□□□ 0.38
SDC1-203ENST00000403076 ICE2Q659A1 982 aa17.43■□□□□ 0.38
SDC1-203ENST00000403076 IRGCQ6NXR0 463 aa17.43■□□□□ 0.38
SDC1-203ENST00000403076 ASCL5Q7RTU5 278 aa17.43■□□□□ 0.38
SDC1-203ENST00000403076 MILR1Q7Z6M3 343 aa17.43■□□□□ 0.38
SDC1-203ENST00000403076 LSMEM2Q8N112 164 aa17.43■□□□□ 0.38
SDC1-203ENST00000403076 OR2A1Q8NGT9 310 aa17.43■□□□□ 0.38
SDC1-203ENST00000403076 SLC5A11Q8WWX8 675 aa17.43■□□□□ 0.38
SDC1-203ENST00000403076 NEIL2Q969S2 332 aa17.43■□□□□ 0.38
SDC1-203ENST00000403076 EPB41L1Q9H4G0 881 aa17.43■□□□□ 0.38
SDC1-203ENST00000403076 MRPS30Q9NP92 439 aaKnown RBP17.43■□□□□ 0.38
SDC1-203ENST00000403076 ADAM21Q9UKJ8 722 aa17.43■□□□□ 0.38
SDC1-203ENST00000403076 EP300Q09472 2414 aaPredicted RBP17.43■□□□□ 0.38
SDC1-203ENST00000403076 OR7A17O14581 309 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 DUX1O43812 170 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 PRICKLE3O43900 615 aaPredicted RBP17.42■□□□□ 0.38
SDC1-203ENST00000403076 UGT2B7P16662 529 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 CKMT2P17540 419 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 GPLD1P80108 840 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 ABATP80404 500 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 PRDX1Q06830 199 aaKnown RBP17.42■□□□□ 0.38
SDC1-203ENST00000403076 NR1D2Q14995 579 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 TUBB8Q3ZCM7 444 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 STPG1Q5TH74 334 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 RGS9BPQ6ZS82 235 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 GPRIN3Q6ZVF9 776 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 SPRED1Q7Z699 444 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 TMPRSS11BQ86T26 416 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 CUZD1Q86UP6 607 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 DCBLD1Q8N8Z6 715 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 OR52B6Q8NGF0 335 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 IFI44Q8TCB0 444 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 ZNF382Q96SR6 550 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 ILKAPQ9H0C8 392 aaPredicted RBP17.42■□□□□ 0.38
SDC1-203ENST00000403076 CCDC134Q9H6E4 229 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 E7EQ34 232 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 SNNO75324 88 aaPredicted RBP17.42■□□□□ 0.38
SDC1-203ENST00000403076 OR4F21O95013 312 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 CLDN9O95484 217 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 CDH1P12830 882 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 PRDX3P30048 256 aaKnown RBP17.42■□□□□ 0.38
SDC1-203ENST00000403076 ARRB2P32121 409 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 PKNOX1P55347 436 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 GALNT1Q10472 559 aaPredicted RBP17.42■□□□□ 0.38
SDC1-203ENST00000403076 NXPE4Q6UWF7 544 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 USP53Q70EK8 1073 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 ADCK2Q7Z695 626 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 FAM20CQ8IXL6 584 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 OR2L3Q8NG85 312 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 AGR3Q8TD06 166 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 CDK15Q96Q40 435 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 OR2A14Q96R47 310 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 CCDC3Q9BQI4 270 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 NTMT1Q9BV86 223 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 C20orf27Q9GZN8 174 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 SYNDIG1Q9H7V2 258 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 PRM3Q9NNZ6 103 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 SLCO1B3Q9NPD5 702 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 SH2B3Q9UQQ2 575 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 FIS1Q9Y3D6 152 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 RAP2CQ9Y3L5 183 aa17.42■□□□□ 0.38
SDC1-203ENST00000403076 PCM1Q15154 2024 aa17.41■□□□□ 0.38
SDC1-203ENST00000403076 UBFD1O14562 309 aaKnown RBP17.41■□□□□ 0.38
SDC1-203ENST00000403076 SNUPNO95149 360 aaKnown RBP17.41■□□□□ 0.38
SDC1-203ENST00000403076 ESRRBO95718 433 aa17.41■□□□□ 0.38
SDC1-203ENST00000403076 C1GALT1C1LP0DN25 315 aa17.41■□□□□ 0.38
SDC1-203ENST00000403076 EPORP19235 508 aa17.41■□□□□ 0.38
SDC1-203ENST00000403076 MPSTP25325 297 aa17.41■□□□□ 0.38
SDC1-203ENST00000403076 YBX1P67809 324 aaKnown RBP17.41■□□□□ 0.38
SDC1-203ENST00000403076 SH3BP2P78314 561 aa17.41■□□□□ 0.38
SDC1-203ENST00000403076 OCRLQ01968 901 aa17.41■□□□□ 0.38
SDC1-203ENST00000403076 TRAF3Q13114 568 aa17.41■□□□□ 0.38
SDC1-203ENST00000403076 SLC5A12Q1EHB4 618 aa17.41■□□□□ 0.38
SDC1-203ENST00000403076 SH2D4BQ5SQS7 431 aa17.41■□□□□ 0.38
SDC1-203ENST00000403076 CATSPEREQ5SY80 951 aa17.41■□□□□ 0.38
SDC1-203ENST00000403076 SPESP1Q6UW49 350 aa17.41■□□□□ 0.38
SDC1-203ENST00000403076 SYVN1Q86TM6 617 aa17.41■□□□□ 0.38
SDC1-203ENST00000403076 TRIM73Q86UV7 250 aa17.41■□□□□ 0.38
SDC1-203ENST00000403076 CRLF3Q8IUI8 442 aa17.41■□□□□ 0.38
SDC1-203ENST00000403076 OR4F6Q8NGB9 312 aa17.41■□□□□ 0.38
SDC1-203ENST00000403076 AGAP11Q8TF27 550 aa17.41■□□□□ 0.38
SDC1-203ENST00000403076 SORT1Q99523 831 aa17.41■□□□□ 0.38
SDC1-203ENST00000403076 ABCG4Q9H172 646 aa17.41■□□□□ 0.38
SDC1-203ENST00000403076 CUEDC1Q9NWM3 386 aaPredicted RBP17.41■□□□□ 0.38
SDC1-203ENST00000403076 RAPGEFL1Q9UHV5 662 aa17.41■□□□□ 0.38
SDC1-203ENST00000403076 EPB41L3Q9Y2J2 1087 aaPredicted RBP17.41■□□□□ 0.38
SDC1-203ENST00000403076 RNF11Q9Y3C5 154 aa17.41■□□□□ 0.38
SDC1-203ENST00000403076 ASCC3Q8N3C0 2202 aaKnown RBP17.41■□□□□ 0.38
SDC1-203ENST00000403076 LOC105378220A0A1B0GUY1 285 aaPredicted RBP17.4■□□□□ 0.38
SDC1-203ENST00000403076 H7BY64 318 aa17.4■□□□□ 0.38
SDC1-203ENST00000403076 CAPN5O15484 640 aaPredicted RBP17.4■□□□□ 0.38
SDC1-203ENST00000403076 FKBP9O95302 570 aa17.4■□□□□ 0.38
SDC1-203ENST00000403076 RPLP0P05388 317 aaKnown RBP17.4■□□□□ 0.38
SDC1-203ENST00000403076 EBLN1P0CF75 366 aa17.4■□□□□ 0.38
SDC1-203ENST00000403076 CDH3P22223 829 aa17.4■□□□□ 0.38
SDC1-203ENST00000403076 VARSP26640 1264 aaKnown RBP17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms