RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 TEFMQ96QE5 360 aaKnown RBP3.95□□□□□ -1.78
HMGB1-204ENST00000399489 FEVQ99581 238 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 SPAG8Q99932 426 aaPredicted RBP3.95□□□□□ -1.78
HMGB1-204ENST00000399489 TMEM79Q9BSE2 394 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 MTG1Q9BT17 334 aaPredicted RBP3.95□□□□□ -1.78
HMGB1-204ENST00000399489 TPSD1Q9BZJ3 242 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 AMBRA1Q9C0C7 1298 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 SIRPDQ9H106 197 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 EVA1AQ9H8M9 152 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 ROPN1Q9HAT0 212 aaPredicted RBP3.95□□□□□ -1.78
HMGB1-204ENST00000399489 MKKSQ9NPJ1 570 aaPredicted RBP3.95□□□□□ -1.78
HMGB1-204ENST00000399489 BARHL2Q9NY43 387 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 FBXO4Q9UKT5 387 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 KIAA1257Q9ULG3 409 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 RNF150Q9ULK6 438 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 AP4B1Q9Y6B7 739 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 COL3A1P02461 1466 aaPredicted RBP3.95□□□□□ -1.78
HMGB1-204ENST00000399489 A0A075B6Q4 140 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 A0A0A0MQY5 61 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 LOC100653049A0A140TA62 436 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 FAM149AA5PLN7 773 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 TMEM247A6NEH6 219 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 LINC01548A6NM66 108 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 H0YGN5 161 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 NDUFS8O00217 210 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 MAP2K7O14733 419 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 CSDE1O75534 798 aaKnown RBP3.95□□□□□ -1.78
HMGB1-204ENST00000399489 KRT34O76011 436 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 NXPH3O95157 252 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 ACSL3O95573 720 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 PRDX6P30041 224 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 ALDH1B1P30837 517 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 RGS7P49802 495 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 ASCL1P50553 236 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 CCT8P50990 548 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 SUCLG1P53597 346 aaKnown RBP3.95□□□□□ -1.78
HMGB1-204ENST00000399489 AP3M2P53677 418 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 AIF1P55008 147 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 WDR5P61964 334 aaKnown RBP3.95□□□□□ -1.78
HMGB1-204ENST00000399489 POLR2LP62875 67 aaKnown RBP3.95□□□□□ -1.78
HMGB1-204ENST00000399489 CTAG1AP78358 180 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 PPP2R2BQ00005 443 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 E2F1Q01094 437 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 SRSF5Q13243 272 aaKnown RBP3.95□□□□□ -1.78
HMGB1-204ENST00000399489 HNRNPDQ14103 355 aaKnown RBP3.95□□□□□ -1.78
HMGB1-204ENST00000399489 PNLIPRP3Q17RR3 467 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 MTX3Q5HYI7 312 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 DCST1Q5T197 706 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 PRSS55Q6UWB4 352 aaPredicted RBP3.95□□□□□ -1.78
HMGB1-204ENST00000399489 NRROSQ86YC3 692 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 KLBQ86Z14 1044 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 C16orf71Q8IYS4 520 aaPredicted RBP3.95□□□□□ -1.78
HMGB1-204ENST00000399489 CENPLQ8N0S6 344 aaPredicted RBP3.95□□□□□ -1.78
HMGB1-204ENST00000399489 FAM71CQ8NEG0 241 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 SEMA6DQ8NFY4 1073 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 WIPF2Q8TF74 440 aaPredicted RBP3.95□□□□□ -1.78
HMGB1-204ENST00000399489 FKBP10Q96AY3 582 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 DHX58Q96C10 678 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 RASD2Q96D21 266 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 ZC3HAV1LQ96H79 300 aaKnown RBP3.95□□□□□ -1.78
HMGB1-204ENST00000399489 LRFN5Q96NI6 719 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 SNX18Q96RF0 628 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 PCYT2Q99447 389 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 FAM110AQ9BQ89 295 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 TUBA1CQ9BQE3 449 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 SIKE1Q9BRV8 207 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 CDT1Q9H211 546 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 CHMP1AQ9HD42 196 aaPredicted RBP3.95□□□□□ -1.78
HMGB1-204ENST00000399489 ZCCHC3Q9NUD5 404 aaKnown RBP3.95□□□□□ -1.78
HMGB1-204ENST00000399489 PIGVQ9NUD9 493 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 HYPKQ9NX55 129 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 MGAT4CQ9UBM8 478 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 AGO2Q9UKV8 859 aaKnown RBP3.95□□□□□ -1.78
HMGB1-204ENST00000399489 MGAT4BQ9UQ53 548 aa3.95□□□□□ -1.78
HMGB1-204ENST00000399489 PTCH1Q13635 1447 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 OBSCNQ5VST9 7968 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 ADGRA2Q96PE1 1338 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 A0A0U1RQF3 1178 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 A0A0U1RQS6 177 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 A0A1B0GUL7 405 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 A0A1W2PN81 502 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 A0A1W2PPQ1 181 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 TMEM8BA6NDV4 472 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 ANKRD28O15084 1053 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 KLK8O60259 260 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 ZNF217O75362 1048 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 KDM4BO94953 1096 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 S100A6P06703 90 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 IL6RP08887 468 aaPredicted RBP3.94□□□□□ -1.78
HMGB1-204ENST00000399489 ETFAP13804 333 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 DDX5P17844 614 aaKnown RBP3.94□□□□□ -1.78
HMGB1-204ENST00000399489 CD22P20273 847 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 TGM2P21980 687 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 CHMLP26374 656 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 CERS1P27544 350 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 NMBRP28336 390 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 GABRA5P31644 462 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 BMI1P35226 326 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 CHRNA7P36544 502 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 PEX5P50542 639 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms