RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 FRG2Q64ET8 278 aa25.89■■□□□ 1.74
MSX1-201ENST00000382723 NXPE4Q6UWF7 544 aa25.89■■□□□ 1.74
MSX1-201ENST00000382723 NAGSQ8N159 534 aa25.89■■□□□ 1.74
MSX1-201ENST00000382723 PTCD3Q96EY7 689 aaKnown RBP25.89■■□□□ 1.74
MSX1-201ENST00000382723 FRG2BQ96QU4 278 aa25.89■■□□□ 1.74
MSX1-201ENST00000382723 PRM3Q9NNZ6 103 aa25.89■■□□□ 1.74
MSX1-201ENST00000382723 B4DGG1 531 aa25.88■■□□□ 1.73
MSX1-201ENST00000382723 ALDOCP09972 364 aaKnown RBP25.88■■□□□ 1.73
MSX1-201ENST00000382723 T-ENOLP0DO92 83 aa25.88■■□□□ 1.73
MSX1-201ENST00000382723 HMGCS1Q01581 520 aa25.88■■□□□ 1.73
MSX1-201ENST00000382723 MEF2AQ02078 507 aaPredicted RBP25.88■■□□□ 1.73
MSX1-201ENST00000382723 KRT72Q14CN4 511 aa25.88■■□□□ 1.73
MSX1-201ENST00000382723 IMPG1Q17R60 797 aa25.88■■□□□ 1.73
MSX1-201ENST00000382723 ATP6AP1LQ52LC2 224 aa25.88■■□□□ 1.73
MSX1-201ENST00000382723 ATG9BQ674R7 924 aa25.88■■□□□ 1.73
MSX1-201ENST00000382723 C11orf74Q86VG3 221 aa25.88■■□□□ 1.73
MSX1-201ENST00000382723 C17orf64Q86WR6 236 aa25.88■■□□□ 1.73
MSX1-201ENST00000382723 SLC37A2Q8TED4 501 aa25.88■■□□□ 1.73
MSX1-201ENST00000382723 ZDHHC1Q8WTX9 485 aa25.88■■□□□ 1.73
MSX1-201ENST00000382723 PCBD2Q9H0N5 130 aa25.88■■□□□ 1.73
MSX1-201ENST00000382723 ZNF385DQ9H6B1 395 aa25.88■■□□□ 1.73
MSX1-201ENST00000382723 SLC40A1Q9NP59 571 aa25.88■■□□□ 1.73
MSX1-201ENST00000382723 CPNE7Q9UBL6 633 aa25.88■■□□□ 1.73
MSX1-201ENST00000382723 SLC12A4Q9UP95 1085 aa25.88■■□□□ 1.73
MSX1-201ENST00000382723 DOLKQ9UPQ8 538 aa25.88■■□□□ 1.73
MSX1-201ENST00000382723 CAPN7Q9Y6W3 813 aa25.88■■□□□ 1.73
MSX1-201ENST00000382723 DNAH14Q0VDD8 3507 aa25.88■■□□□ 1.73
MSX1-201ENST00000382723 SLC28A1O00337 649 aa25.88■■□□□ 1.73
MSX1-201ENST00000382723 RGS14O43566 566 aa25.88■■□□□ 1.73
MSX1-201ENST00000382723 SDC3O75056 442 aa25.88■■□□□ 1.73
MSX1-201ENST00000382723 XRCC1P18887 633 aaPredicted RBP25.88■■□□□ 1.73
MSX1-201ENST00000382723 CASP2P42575 452 aa25.88■■□□□ 1.73
MSX1-201ENST00000382723 KLF10Q13118 480 aa25.88■■□□□ 1.73
MSX1-201ENST00000382723 SLBPQ14493 270 aaKnown RBP eCLIP25.88■■□□□ 1.73
MSX1-201ENST00000382723 PLCL1Q15111 1095 aa25.88■■□□□ 1.73
MSX1-201ENST00000382723 TEAD4Q15561 434 aa25.88■■□□□ 1.73
MSX1-201ENST00000382723 TBCCQ15814 346 aa25.88■■□□□ 1.73
MSX1-201ENST00000382723 PLK5Q496M5 336 aa25.88■■□□□ 1.73
MSX1-201ENST00000382723 AMIGO1Q86WK6 493 aa25.88■■□□□ 1.73
MSX1-201ENST00000382723 RNF175Q8N4F7 328 aa25.88■■□□□ 1.73
MSX1-201ENST00000382723 CPSF7Q8N684 471 aaKnown RBP25.88■■□□□ 1.73
MSX1-201ENST00000382723 HMGCLL1Q8TB92 370 aa25.88■■□□□ 1.73
MSX1-201ENST00000382723 TMEM74BQ9NUR3 256 aa25.88■■□□□ 1.73
MSX1-201ENST00000382723 SPASTQ9UBP0 616 aa25.88■■□□□ 1.73
MSX1-201ENST00000382723 PRR35P0CG20 571 aa25.87■■□□□ 1.73
MSX1-201ENST00000382723 SHMT2P34897 504 aa25.87■■□□□ 1.73
MSX1-201ENST00000382723 HNRNPKP61978 463 aaKnown RBP eCLIP25.87■■□□□ 1.73
MSX1-201ENST00000382723 DDX39BQ13838 428 aaKnown RBP25.87■■□□□ 1.73
MSX1-201ENST00000382723 TRIM46Q7Z4K8 759 aa25.87■■□□□ 1.73
MSX1-201ENST00000382723 NSL1Q96IY1 281 aa25.87■■□□□ 1.73
MSX1-201ENST00000382723 CUEDC1Q9NWM3 386 aaPredicted RBP25.87■■□□□ 1.73
MSX1-201ENST00000382723 FBXO4Q9UKT5 387 aa25.87■■□□□ 1.73
MSX1-201ENST00000382723 CCL27Q9Y4X3 112 aa25.87■■□□□ 1.73
MSX1-201ENST00000382723 A0A0C4DFX4 3053 aa25.87■■□□□ 1.73
MSX1-201ENST00000382723 KIR2DS5A0A0G2JLQ3 304 aa25.86■■□□□ 1.73
MSX1-201ENST00000382723 A0A0G2JNG1 304 aa25.86■■□□□ 1.73
MSX1-201ENST00000382723 OR5K4A6NMS3 321 aa25.86■■□□□ 1.73
MSX1-201ENST00000382723 KIR2DS3K7RE56 304 aa25.86■■□□□ 1.73
MSX1-201ENST00000382723 LSM1O15116 133 aaKnown RBP25.86■■□□□ 1.73
MSX1-201ENST00000382723 PCNAP12004 261 aa25.86■■□□□ 1.73
MSX1-201ENST00000382723 GPR18Q14330 331 aa25.86■■□□□ 1.73
MSX1-201ENST00000382723 KIR2DS5Q14953 304 aa25.86■■□□□ 1.73
MSX1-201ENST00000382723 C6orf136Q5SQH8 315 aa25.86■■□□□ 1.73
MSX1-201ENST00000382723 GKN2Q86XP6 184 aa25.86■■□□□ 1.73
MSX1-201ENST00000382723 FNDC5Q8NAU1 212 aa25.86■■□□□ 1.73
MSX1-201ENST00000382723 C1orf50Q9BV19 199 aa25.86■■□□□ 1.73
MSX1-201ENST00000382723 ACPTQ9BZG2 426 aa25.86■■□□□ 1.73
MSX1-201ENST00000382723 SRMSQ9H3Y6 488 aa25.86■■□□□ 1.73
MSX1-201ENST00000382723 TXLNGQ9NUQ3 528 aa25.86■■□□□ 1.73
MSX1-201ENST00000382723 GEMIN8Q9NWZ8 242 aaKnown RBP25.86■■□□□ 1.73
MSX1-201ENST00000382723 PRDM4Q9UKN5 801 aa25.86■■□□□ 1.73
MSX1-201ENST00000382723 FANCMQ8IYD8 2048 aa25.86■■□□□ 1.73
MSX1-201ENST00000382723 H0YIV9 168 aa25.86■■□□□ 1.73
MSX1-201ENST00000382723 SLC2A4P14672 509 aa25.86■■□□□ 1.73
MSX1-201ENST00000382723 GNSP15586 552 aa25.86■■□□□ 1.73
MSX1-201ENST00000382723 SCTRP47872 440 aa25.86■■□□□ 1.73
MSX1-201ENST00000382723 ADNP2Q6IQ32 1131 aa25.86■■□□□ 1.73
MSX1-201ENST00000382723 RNF165Q6ZSG1 346 aa25.86■■□□□ 1.73
MSX1-201ENST00000382723 CEP68Q76N32 757 aa25.86■■□□□ 1.73
MSX1-201ENST00000382723 FBXL6Q8N531 539 aa25.86■■□□□ 1.73
MSX1-201ENST00000382723 ZNF548Q8NEK5 533 aaPredicted RBP25.86■■□□□ 1.73
MSX1-201ENST00000382723 WDR20Q8TBZ3 569 aa25.86■■□□□ 1.73
MSX1-201ENST00000382723 WDR34Q96EX3 536 aa25.86■■□□□ 1.73
MSX1-201ENST00000382723 MTERF1Q99551 399 aaKnown RBP25.86■■□□□ 1.73
MSX1-201ENST00000382723 EFCAB11Q9BUY7 163 aa25.86■■□□□ 1.73
MSX1-201ENST00000382723 SPNS1Q9H2V7 528 aa25.86■■□□□ 1.73
MSX1-201ENST00000382723 EHD1Q9H4M9 534 aa25.86■■□□□ 1.73
MSX1-201ENST00000382723 POT1Q9NUX5 634 aa25.86■■□□□ 1.73
MSX1-201ENST00000382723 SPHK1Q9NYA1 384 aa25.86■■□□□ 1.73
MSX1-201ENST00000382723 PCDHGA11Q9Y5H2 935 aa25.86■■□□□ 1.73
MSX1-201ENST00000382723 THADAQ6YHU6 1953 aa25.86■■□□□ 1.73
MSX1-201ENST00000382723 A0A1B0GTW7 788 aa25.85■■□□□ 1.73
MSX1-201ENST00000382723 YY2O15391 372 aa25.85■■□□□ 1.73
MSX1-201ENST00000382723 UNC5CO95185 931 aa25.85■■□□□ 1.73
MSX1-201ENST00000382723 ESRRAP11474 423 aaPredicted RBP25.85■■□□□ 1.73
MSX1-201ENST00000382723 CD1EP15812 388 aa25.85■■□□□ 1.73
MSX1-201ENST00000382723 UBE2IP63279 158 aaKnown RBP25.85■■□□□ 1.73
MSX1-201ENST00000382723 E2F2Q14209 437 aa25.85■■□□□ 1.73
MSX1-201ENST00000382723 KIF19Q2TAC6 998 aa25.85■■□□□ 1.73
MSX1-201ENST00000382723 AP5B1Q2VPB7 878 aa25.85■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms