RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 GPAT4Q86UL3 456 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 CLEC10AQ8IUN9 316 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 NFKBIDQ8NI38 313 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 NUDT8Q8WV74 236 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 RXFP2Q8WXD0 754 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 THRSPQ92748 146 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 FAM120BQ96EK7 910 aaKnown RBP3.99□□□□□ -1.77
USH2A-202ENST00000366942 MAELQ96JY0 434 aaKnown RBP3.99□□□□□ -1.77
USH2A-202ENST00000366942 SLC38A2Q96QD8 506 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 WDR24Q96S15 920 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 MRI1Q9BV20 369 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 ACAT2Q9BWD1 397 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 REPIN1Q9BWE0 567 aaKnown RBP3.99□□□□□ -1.77
USH2A-202ENST00000366942 TLR10Q9BXR5 811 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 GRIP2Q9C0E4 1043 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 LSG1Q9H089 658 aaKnown RBP3.99□□□□□ -1.77
USH2A-202ENST00000366942 MRPL46Q9H2W6 279 aaKnown RBP3.99□□□□□ -1.77
USH2A-202ENST00000366942 GHITMQ9H3K2 345 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 PCDH9Q9HC56 1237 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 BRD7Q9NPI1 651 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 AMACRQ9UHK6 382 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 SAR1BQ9Y6B6 198 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 A0A087WUV0 522 aaPredicted RBP3.99□□□□□ -1.77
USH2A-202ENST00000366942 A0A1W2PQH9 124 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 C1orf226A1L170 272 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 PRORSD1PA6NEY8 169 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 OR6C65A6NJZ3 312 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 A8MUA0 341 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 A8MX80 341 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 CTIFO43310 598 aaKnown RBP3.99□□□□□ -1.77
USH2A-202ENST00000366942 DNAJB5O75953 348 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 GSRP00390 522 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 IFNW1P05000 195 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 DBTP11182 482 aaKnown RBP3.99□□□□□ -1.77
USH2A-202ENST00000366942 ITGA2P17301 1181 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 ENGP17813 658 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 S100A3P33764 101 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 PBX3P40426 434 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 GALK1P51570 392 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 CCR5P51681 352 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 PPP3R1P63098 170 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 MBTD1Q05BQ5 628 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 DNASE1L3Q13609 305 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 DEFB133Q30KQ1 61 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 SLC8B1Q6J4K2 584 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 TMEM214Q6NUQ4 689 aaKnown RBP3.99□□□□□ -1.77
USH2A-202ENST00000366942 CAMKMTQ7Z624 323 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 SH3RF1Q7Z6J0 888 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 ARPINQ7Z6K5 226 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 GRAMD1CQ8IYS0 662 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 CBARPQ8N350 705 aaPredicted RBP3.99□□□□□ -1.77
USH2A-202ENST00000366942 ZNF611Q8N823 705 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 RFFLQ8WZ73 363 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 PPCDCQ96CD2 204 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 EEF2KMTQ96G04 330 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 TRAPPC9Q96Q05 1148 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 TMEM246Q9BRR3 403 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 MRPS26Q9BYN8 205 aaKnown RBP3.99□□□□□ -1.77
USH2A-202ENST00000366942 RYDENQ9NUL5 291 aaKnown RBP3.99□□□□□ -1.77
USH2A-202ENST00000366942 ETNK2Q9NVF9 386 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 USE1Q9NZ43 259 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 SHOC2Q9UQ13 582 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 MMACHCQ9Y4U1 282 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 RPS6KL1Q9Y6S9 549 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 RFXAPO00287 272 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 ADAMTS3O15072 1205 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 SNPHO15079 494 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 TULP3O75386 442 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 RGS20O76081 388 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 CNTFP26441 200 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 RORAP35398 523 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 STARP49675 285 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 PLK1P53350 603 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 ENPP2Q13822 863 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 CYLC2Q14093 348 aaPredicted RBP3.99□□□□□ -1.77
USH2A-202ENST00000366942 ITIH4Q14624 930 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 ZNF630Q2M218 657 aaPredicted RBP3.99□□□□□ -1.77
USH2A-202ENST00000366942 TXNDC11Q6PKC3 985 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 MFSD7Q6UXD7 560 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 TRAPPC6BQ86SZ2 158 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 GHDCQ8N2G8 530 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 SLC43A3Q8NBI5 491 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 RDH11Q8TC12 318 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 TRIM51Q9BSJ1 452 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 HOXD1Q9GZZ0 328 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 SLC39A9Q9NUM3 307 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 MRPL39Q9NYK5 338 aaKnown RBP3.99□□□□□ -1.77
USH2A-202ENST00000366942 FZD4Q9ULV1 537 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 CAPN11Q9UMQ6 739 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 ST14Q9Y5Y6 855 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 SAGE2PA6NJ88 616 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 PAK4O96013 591 aaPredicted RBP3.99□□□□□ -1.77
USH2A-202ENST00000366942 RLBP1P12271 317 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 ITGB5P18084 799 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 CHMP24386 653 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 GGT2P36268 569 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 MAGEA8P43361 318 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 STK19P49842 368 aaPredicted RBP3.99□□□□□ -1.77
USH2A-202ENST00000366942 PGS1Q32NB8 556 aa3.99□□□□□ -1.77
USH2A-202ENST00000366942 PLA2G4EQ3MJ16 856 aa3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms