RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 ATP6AP1LQ52LC2 224 aa8.97□□□□□ -0.97
ATG4A-202ENST00000345734 AGBL4Q5VU57 503 aa8.97□□□□□ -0.97
ATG4A-202ENST00000345734 FAM46CQ5VWP2 391 aa8.97□□□□□ -0.97
ATG4A-202ENST00000345734 METTL2BQ6P1Q9 378 aaKnown RBP8.97□□□□□ -0.97
ATG4A-202ENST00000345734 JAZF1Q86VZ6 243 aa8.97□□□□□ -0.97
ATG4A-202ENST00000345734 TRAPPC5Q8IUR0 188 aa8.97□□□□□ -0.97
ATG4A-202ENST00000345734 CFAP206Q8IYR0 622 aa8.97□□□□□ -0.97
ATG4A-202ENST00000345734 TDHQ8IZJ6 230 aa8.97□□□□□ -0.97
ATG4A-202ENST00000345734 TCAIMQ8N3R3 496 aa8.97□□□□□ -0.97
ATG4A-202ENST00000345734 FAM156AQ8NDB6 213 aa8.97□□□□□ -0.97
ATG4A-202ENST00000345734 MCOLN3Q8TDD5 553 aa8.97□□□□□ -0.97
ATG4A-202ENST00000345734 MTFMTQ96DP5 389 aaKnown RBP8.97□□□□□ -0.97
ATG4A-202ENST00000345734 SHDQ96IW2 340 aa8.97□□□□□ -0.97
ATG4A-202ENST00000345734 CCT7Q99832 543 aa8.97□□□□□ -0.97
ATG4A-202ENST00000345734 SLC39A3Q9BRY0 314 aa8.97□□□□□ -0.97
ATG4A-202ENST00000345734 RSPH9Q9H1X1 276 aaPredicted RBP8.97□□□□□ -0.97
ATG4A-202ENST00000345734 IL1RL2Q9HB29 575 aa8.97□□□□□ -0.97
ATG4A-202ENST00000345734 SLC52A3Q9NQ40 469 aa8.97□□□□□ -0.97
ATG4A-202ENST00000345734 NDE1Q9NXR1 346 aa8.97□□□□□ -0.97
ATG4A-202ENST00000345734 TUBA8Q9NY65 449 aaPredicted RBP8.97□□□□□ -0.97
ATG4A-202ENST00000345734 ADA2Q9NZK5 511 aa8.97□□□□□ -0.97
ATG4A-202ENST00000345734 TRPS1Q9UHF7 1281 aa8.97□□□□□ -0.97
ATG4A-202ENST00000345734 SLC22A14Q9Y267 594 aa8.97□□□□□ -0.97
ATG4A-202ENST00000345734 CCL27Q9Y4X3 112 aa8.97□□□□□ -0.97
ATG4A-202ENST00000345734 DNAH14Q0VDD8 3507 aa8.97□□□□□ -0.97
ATG4A-202ENST00000345734 PABPN1LA6NDY0 278 aaKnown RBP8.96□□□□□ -0.97
ATG4A-202ENST00000345734 MANBAO00462 879 aa8.96□□□□□ -0.97
ATG4A-202ENST00000345734 PRAMEF4O60810 478 aa8.96□□□□□ -0.97
ATG4A-202ENST00000345734 PSIP1O75475 530 aaKnown RBP8.96□□□□□ -0.97
ATG4A-202ENST00000345734 RGS9O75916 674 aaPredicted RBP8.96□□□□□ -0.97
ATG4A-202ENST00000345734 CLDN9O95484 217 aa8.96□□□□□ -0.97
ATG4A-202ENST00000345734 PCCBP05166 539 aa8.96□□□□□ -0.97
ATG4A-202ENST00000345734 RPSAP08865 295 aaKnown RBP8.96□□□□□ -0.97
ATG4A-202ENST00000345734 ZNF8P17098 575 aaPredicted RBP8.96□□□□□ -0.97
ATG4A-202ENST00000345734 TCN1P20061 433 aaPredicted RBP8.96□□□□□ -0.97
ATG4A-202ENST00000345734 IL12AP29459 219 aa8.96□□□□□ -0.97
ATG4A-202ENST00000345734 KIR2DL1P43626 348 aaPredicted RBP8.96□□□□□ -0.97
ATG4A-202ENST00000345734 HNMTP50135 292 aa8.96□□□□□ -0.97
ATG4A-202ENST00000345734 ATXN3P54252 364 aaPredicted RBP8.96□□□□□ -0.97
ATG4A-202ENST00000345734 HMGCS1Q01581 520 aa8.96□□□□□ -0.97
ATG4A-202ENST00000345734 SLC34A1Q06495 639 aa8.96□□□□□ -0.97
ATG4A-202ENST00000345734 CPSF6Q16630 551 aaKnown RBP eCLIP8.96□□□□□ -0.97
ATG4A-202ENST00000345734 AAK1Q2M2I8 961 aa8.96□□□□□ -0.97
ATG4A-202ENST00000345734 AP5B1Q2VPB7 878 aa8.96□□□□□ -0.97
ATG4A-202ENST00000345734 PLA2G4EQ3MJ16 856 aa8.96□□□□□ -0.97
ATG4A-202ENST00000345734 RFTN2Q52LD8 501 aaPredicted RBP8.96□□□□□ -0.97
ATG4A-202ENST00000345734 HABP4Q5JVS0 413 aaKnown RBP8.96□□□□□ -0.97
ATG4A-202ENST00000345734 PRAMEF9Q5VWM5 478 aa8.96□□□□□ -0.97
ATG4A-202ENST00000345734 KIAA1211LQ6NV74 962 aa8.96□□□□□ -0.97
ATG4A-202ENST00000345734 C8orf82Q6P1X6 216 aaPredicted RBP8.96□□□□□ -0.97
ATG4A-202ENST00000345734 CRTC3Q6UUV7 619 aa8.96□□□□□ -0.97
ATG4A-202ENST00000345734 LRRC70Q7Z2Q7 622 aa8.96□□□□□ -0.97
ATG4A-202ENST00000345734 ZNF547Q8IVP9 402 aa8.96□□□□□ -0.97
ATG4A-202ENST00000345734 SLC26A7Q8TE54 656 aa8.96□□□□□ -0.97
ATG4A-202ENST00000345734 NANOS1Q8WY41 292 aaKnown RBP8.96□□□□□ -0.97
ATG4A-202ENST00000345734 VPS33AQ96AX1 596 aa8.96□□□□□ -0.97
ATG4A-202ENST00000345734 SERPINI1Q99574 410 aa8.96□□□□□ -0.97
ATG4A-202ENST00000345734 BRINP2Q9C0B6 783 aa8.96□□□□□ -0.97
ATG4A-202ENST00000345734 ACTR8Q9H981 624 aa8.96□□□□□ -0.97
ATG4A-202ENST00000345734 S100A14Q9HCY8 104 aa8.96□□□□□ -0.97
ATG4A-202ENST00000345734 PFDN4Q9NQP4 134 aa8.96□□□□□ -0.97
ATG4A-202ENST00000345734 ZNF490Q9ULM2 529 aaPredicted RBP8.96□□□□□ -0.97
ATG4A-202ENST00000345734 TMA7Q9Y2S6 64 aaKnown RBP8.96□□□□□ -0.97
ATG4A-202ENST00000345734 PRKAB1Q9Y478 270 aa8.96□□□□□ -0.97
ATG4A-202ENST00000345734 ASPDHA6ND91 283 aa8.96□□□□□ -0.98
ATG4A-202ENST00000345734 TMEM221A6NGB7 291 aa8.96□□□□□ -0.98
ATG4A-202ENST00000345734 SMAD7O15105 426 aaKnown RBP8.96□□□□□ -0.98
ATG4A-202ENST00000345734 ULK1O75385 1050 aa8.96□□□□□ -0.98
ATG4A-202ENST00000345734 SLC22A3O75751 556 aa8.96□□□□□ -0.98
ATG4A-202ENST00000345734 PCDH8O95206 1070 aa8.96□□□□□ -0.98
ATG4A-202ENST00000345734 BAG2O95816 211 aa8.96□□□□□ -0.98
ATG4A-202ENST00000345734 ARAFP10398 606 aa8.96□□□□□ -0.98
ATG4A-202ENST00000345734 ANPEPP15144 967 aa8.96□□□□□ -0.98
ATG4A-202ENST00000345734 MAP4P27816 1152 aaKnown RBP8.96□□□□□ -0.98
ATG4A-202ENST00000345734 MTHFRP42898 656 aa8.96□□□□□ -0.98
ATG4A-202ENST00000345734 AP1S2P56377 157 aa8.96□□□□□ -0.98
ATG4A-202ENST00000345734 PFN3P60673 137 aa8.96□□□□□ -0.98
ATG4A-202ENST00000345734 YBX1P67809 324 aaKnown RBP8.96□□□□□ -0.98
ATG4A-202ENST00000345734 HTR4Q13639 388 aa8.96□□□□□ -0.98
ATG4A-202ENST00000345734 BCL7AQ4VC05 210 aa8.96□□□□□ -0.98
ATG4A-202ENST00000345734 PDCD4Q53EL6 469 aaKnown RBP8.96□□□□□ -0.98
ATG4A-202ENST00000345734 DOK6Q6PKX4 331 aa8.96□□□□□ -0.98
ATG4A-202ENST00000345734 REC114Q7Z4M0 266 aa8.96□□□□□ -0.98
ATG4A-202ENST00000345734 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.96□□□□□ -0.988e-6■■■■■ 46.4
ATG4A-202ENST00000345734 SLC22A15Q8IZD6 547 aa8.96□□□□□ -0.98
ATG4A-202ENST00000345734 HDDC3Q8N4P3 179 aa8.96□□□□□ -0.98
ATG4A-202ENST00000345734 IL22RA1Q8N6P7 574 aa8.96□□□□□ -0.98
ATG4A-202ENST00000345734 RAB7BQ96AH8 199 aa8.96□□□□□ -0.98
ATG4A-202ENST00000345734 MSLNLQ96KJ4 702 aa8.96□□□□□ -0.98
ATG4A-202ENST00000345734 SLC6A17Q9H1V8 727 aa8.96□□□□□ -0.98
ATG4A-202ENST00000345734 EPHX3Q9H6B9 360 aa8.96□□□□□ -0.98
ATG4A-202ENST00000345734 TRIM39Q9HCM9 518 aa8.96□□□□□ -0.98
ATG4A-202ENST00000345734 CROTQ9UKG9 612 aa8.96□□□□□ -0.98
ATG4A-202ENST00000345734 POLR3HQ9Y535 204 aaPredicted RBP8.96□□□□□ -0.98
ATG4A-202ENST00000345734 PCM1Q15154 2024 aa8.96□□□□□ -0.98
ATG4A-202ENST00000345734 KCNE1BA0A087WTH5 132 aa8.95□□□□□ -0.98
ATG4A-202ENST00000345734 LINC01387J3KSC0 135 aa8.95□□□□□ -0.98
ATG4A-202ENST00000345734 NPC1O15118 1278 aa8.95□□□□□ -0.98
ATG4A-202ENST00000345734 ANGPT2O15123 496 aa8.95□□□□□ -0.98
ATG4A-202ENST00000345734 RSL1D1O76021 490 aaKnown RBP8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms