RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 SETMARQ53H47 684 aaPredicted RBP11.62□□□□□ -0.55
USP1-201ENST00000339950 ARSIQ5FYB1 569 aa11.62□□□□□ -0.55
USP1-201ENST00000339950 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.62□□□□□ -0.55
USP1-201ENST00000339950 TTC23LQ6PF05 361 aa11.62□□□□□ -0.55
USP1-201ENST00000339950 FAM20CQ8IXL6 584 aa11.62□□□□□ -0.55
USP1-201ENST00000339950 GPR65Q8IYL9 337 aa11.62□□□□□ -0.55
USP1-201ENST00000339950 KCNJ9Q92806 393 aa11.62□□□□□ -0.55
USP1-201ENST00000339950 SLC35F4A4IF30 521 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 SYN3O14994 580 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 MT-ND2P03891 347 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 CYP11A1P05108 521 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 ENO2P09104 434 aaPredicted RBP11.61□□□□□ -0.55
USP1-201ENST00000339950 DEFA1P59665 94 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 DEFA3P59666 94 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 ST8SIA6P61647 398 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 MC1RQ01726 317 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 LMAN2Q12907 356 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 NFATC3Q12968 1075 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 CPTPQ5TA50 214 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 TMEM220Q6QAJ8 160 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 VRK3Q8IV63 474 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 BCL7CQ8WUZ0 217 aaPredicted RBP11.61□□□□□ -0.55
USP1-201ENST00000339950 LINC01599Q8WXQ3 324 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 SORBS1Q9BX66 1292 aaKnown RBP11.61□□□□□ -0.55
USP1-201ENST00000339950 PRRG3Q9BZD7 231 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 ARNT2Q9HBZ2 717 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 MRM3Q9HC36 420 aaKnown RBP11.61□□□□□ -0.55
USP1-201ENST00000339950 FAM118AQ9NWS6 357 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 IL17CQ9P0M4 197 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 DNAJB9Q9UBS3 223 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 ABCG2Q9UNQ0 655 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 ASF1AQ9Y294 204 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 SLC28A1O00337 649 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 PENKP01210 267 aaPredicted RBP11.61□□□□□ -0.55
USP1-201ENST00000339950 IL6P05231 212 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 ACPPP15309 386 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 CD36P16671 472 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 C2orf80Q0P641 193 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 SMARCB1Q12824 385 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 CNTN1Q12860 1018 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 HSPB3Q12988 150 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 SPCS2Q15005 226 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 GPRC6AQ5T6X5 926 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 LCN8Q6JVE9 175 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 NPAS4Q8IUM7 802 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 SGIP1Q9BQI5 828 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.61□□□□□ -0.55
USP1-201ENST00000339950 CARS2Q9HA77 564 aaKnown RBP11.61□□□□□ -0.55
USP1-201ENST00000339950 GPBP1L1Q9HC44 474 aaPredicted RBP11.61□□□□□ -0.55
USP1-201ENST00000339950 TPRKBQ9Y3C4 175 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 CORINQ9Y5Q5 1042 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 FAM186AA6NE01 2351 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 C5orf42Q9H799 3197 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 ZNF638Q14966 1978 aaKnown RBP11.61□□□□□ -0.55
USP1-201ENST00000339950 ANKRD33BA6NCL7 494 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 HNRNPCL2B2RXH8 293 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 SUV39H1O43463 412 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 AP1G1O43747 822 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 EOMESO95936 686 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 RPS17P08708 135 aaKnown RBP11.61□□□□□ -0.55
USP1-201ENST00000339950 LAMP1P11279 417 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 RRM2P31350 389 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 TLE2Q04725 743 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 EMX2Q04743 252 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 CCSMST1Q4G0I0 132 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 ARMC4Q5T2S8 1044 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 DUS1LQ6P1R4 473 aaKnown RBP11.61□□□□□ -0.55
USP1-201ENST00000339950 TICAM1Q8IUC6 712 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 TMEM126BQ8IUX1 230 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 RHEBL1Q8TAI7 183 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 NDNFQ8TB73 568 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 TOP1MTQ969P6 601 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 EXOSC8Q96B26 276 aaKnown RBP11.61□□□□□ -0.55
USP1-201ENST00000339950 HSH2DQ96JZ2 352 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 RBM4BQ9BQ04 359 aaKnown RBP11.61□□□□□ -0.55
USP1-201ENST00000339950 RBM4Q9BWF3 364 aaKnown RBP11.61□□□□□ -0.55
USP1-201ENST00000339950 CD244Q9BZW8 370 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 DNAJC11Q9NVH1 559 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 SPG21Q9NZD8 308 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 PCDHA9Q9Y5H5 950 aa11.61□□□□□ -0.55
USP1-201ENST00000339950 A0A096LPI6 279 aa11.6□□□□□ -0.55
USP1-201ENST00000339950 ASPDHA6ND91 283 aa11.6□□□□□ -0.55
USP1-201ENST00000339950 MAGEB17A8MXT2 336 aa11.6□□□□□ -0.55
USP1-201ENST00000339950 M0QX08 132 aa11.6□□□□□ -0.55
USP1-201ENST00000339950 OR7A17O14581 309 aa11.6□□□□□ -0.55
USP1-201ENST00000339950 CXCL14O95715 111 aa11.6□□□□□ -0.55
USP1-201ENST00000339950 C21orf33P30042 268 aaPredicted RBP11.6□□□□□ -0.55
USP1-201ENST00000339950 COPZ1P61923 177 aa11.6□□□□□ -0.55
USP1-201ENST00000339950 TRAF3Q13114 568 aa11.6□□□□□ -0.55
USP1-201ENST00000339950 ATP6AP1Q15904 470 aa11.6□□□□□ -0.55
USP1-201ENST00000339950 NKG7Q16617 165 aa11.6□□□□□ -0.55
USP1-201ENST00000339950 RFX4Q33E94 735 aa11.6□□□□□ -0.55
USP1-201ENST00000339950 PABPC1LQ4VXU2 614 aaKnown RBP11.6□□□□□ -0.55
USP1-201ENST00000339950 SNX20Q7Z614 316 aa11.6□□□□□ -0.55
USP1-201ENST00000339950 MRPL10Q7Z7H8 261 aaKnown RBP11.6□□□□□ -0.55
USP1-201ENST00000339950 XAGE5Q8WWM1 108 aa11.6□□□□□ -0.55
USP1-201ENST00000339950 ZUFSPQ96AP4 578 aa11.6□□□□□ -0.55
USP1-201ENST00000339950 MTERF3Q96E29 417 aa11.6□□□□□ -0.55
USP1-201ENST00000339950 MACROD1Q9BQ69 325 aa11.6□□□□□ -0.55
USP1-201ENST00000339950 FAM83DQ9H4H8 585 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms