RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 C1GALT1Q9NS00 363 aa21.36■■□□□ 1.01
SDC3-202ENST00000339394 OXSMQ9NWU1 459 aa21.36■■□□□ 1.01
SDC3-202ENST00000339394 WDFY3Q8IZQ1 3526 aa21.36■■□□□ 1.01
SDC3-202ENST00000339394 IGHV5-51A0A0C4DH38 117 aa21.36■■□□□ 1.01
SDC3-202ENST00000339394 K7EPI3 171 aa21.36■■□□□ 1.01
SDC3-202ENST00000339394 ZFP36L1Q07352 338 aaKnown RBP21.36■■□□□ 1.01
SDC3-202ENST00000339394 PCLAFQ15004 111 aa21.36■■□□□ 1.01
SDC3-202ENST00000339394 CACHD1Q5VU97 1274 aa21.36■■□□□ 1.01
SDC3-202ENST00000339394 METTL2BQ6P1Q9 378 aaKnown RBP21.36■■□□□ 1.01
SDC3-202ENST00000339394 LRRC70Q7Z2Q7 622 aa21.36■■□□□ 1.01
SDC3-202ENST00000339394 C10orf107Q8IVU9 208 aa21.36■■□□□ 1.01
SDC3-202ENST00000339394 TMEM237Q96Q45 408 aa21.36■■□□□ 1.01
SDC3-202ENST00000339394 HAUS8Q9BT25 410 aa21.36■■□□□ 1.01
SDC3-202ENST00000339394 DNAJC11Q9NVH1 559 aa21.36■■□□□ 1.01
SDC3-202ENST00000339394 OPTCQ9UBM4 332 aa21.36■■□□□ 1.01
SDC3-202ENST00000339394 SH2B3Q9UQQ2 575 aa21.36■■□□□ 1.01
SDC3-202ENST00000339394 KLHL20Q9Y2M5 609 aa21.36■■□□□ 1.01
SDC3-202ENST00000339394 KCNE2Q9Y6J6 123 aa21.36■■□□□ 1.01
SDC3-202ENST00000339394 A0A0J9YY10 115 aa21.35■■□□□ 1.01
SDC3-202ENST00000339394 A8MU76 341 aa21.35■■□□□ 1.01
SDC3-202ENST00000339394 E2F3O00716 465 aa21.35■■□□□ 1.01
SDC3-202ENST00000339394 TOX3O15405 576 aaPredicted RBP21.35■■□□□ 1.01
SDC3-202ENST00000339394 PVRP15151 417 aa21.35■■□□□ 1.01
SDC3-202ENST00000339394 IMPDH1P20839 514 aa21.35■■□□□ 1.01
SDC3-202ENST00000339394 CMPK1P30085 196 aa21.35■■□□□ 1.01
SDC3-202ENST00000339394 HERVK_113P63132 956 aa21.35■■□□□ 1.01
SDC3-202ENST00000339394 ABATP80404 500 aa21.35■■□□□ 1.01
SDC3-202ENST00000339394 HSP90B2PQ58FF3 399 aa21.35■■□□□ 1.01
SDC3-202ENST00000339394 ZNF678Q5SXM1 525 aa21.35■■□□□ 1.01
SDC3-202ENST00000339394 HES3Q5TGS1 186 aa21.35■■□□□ 1.01
SDC3-202ENST00000339394 PRSS42Q7Z5A4 293 aa21.35■■□□□ 1.01
SDC3-202ENST00000339394 ARHGAP22Q7Z5H3 698 aa21.35■■□□□ 1.01
SDC3-202ENST00000339394 RAB44Q7Z6P3 723 aaPredicted RBP21.35■■□□□ 1.01
SDC3-202ENST00000339394 ANKRD42Q8N9B4 389 aa21.35■■□□□ 1.01
SDC3-202ENST00000339394 RCBTB1Q8NDN9 531 aa21.35■■□□□ 1.01
SDC3-202ENST00000339394 CCDC74BQ96LY2 380 aa21.35■■□□□ 1.01
SDC3-202ENST00000339394 SELENOSQ9BQE4 189 aa21.35■■□□□ 1.01
SDC3-202ENST00000339394 MECRQ9BV79 373 aa21.35■■□□□ 1.01
SDC3-202ENST00000339394 C1QTNF3Q9BXJ4 246 aa21.35■■□□□ 1.01
SDC3-202ENST00000339394 ERVK-6Q9BXR3 956 aa21.35■■□□□ 1.01
SDC3-202ENST00000339394 KLHL25Q9H0H3 589 aa21.35■■□□□ 1.01
SDC3-202ENST00000339394 MRPS30Q9NP92 439 aaKnown RBP21.35■■□□□ 1.01
SDC3-202ENST00000339394 MED4Q9NPJ6 270 aa21.35■■□□□ 1.01
SDC3-202ENST00000339394 SEMA5BQ9P283 1151 aa21.35■■□□□ 1.01
SDC3-202ENST00000339394 CNOT1A5YKK6 2376 aaKnown RBP21.35■■□□□ 1.01
SDC3-202ENST00000339394 IGKV1-8A0A0C4DH67 115 aa21.34■■□□□ 1.01
SDC3-202ENST00000339394 SLC9B1P1A6NJY1 282 aa21.34■■□□□ 1.01
SDC3-202ENST00000339394 CCNDBP1O95273 360 aa21.34■■□□□ 1.01
SDC3-202ENST00000339394 FKBP9O95302 570 aa21.34■■□□□ 1.01
SDC3-202ENST00000339394 MT-CO3P00414 261 aa21.34■■□□□ 1.01
SDC3-202ENST00000339394 ST6GAL1P15907 406 aa21.34■■□□□ 1.01
SDC3-202ENST00000339394 MAGP20916 626 aa21.34■■□□□ 1.01
SDC3-202ENST00000339394 SERPINB4P48594 390 aa21.34■■□□□ 1.01
SDC3-202ENST00000339394 CDC16Q13042 620 aa21.34■■□□□ 1.01
SDC3-202ENST00000339394 PDK4Q16654 411 aa21.34■■□□□ 1.01
SDC3-202ENST00000339394 PHF19Q5T6S3 580 aa21.34■■□□□ 1.01
SDC3-202ENST00000339394 C17orf64Q86WR6 236 aa21.34■■□□□ 1.01
SDC3-202ENST00000339394 CARFQ8N187 725 aa21.34■■□□□ 1.01
SDC3-202ENST00000339394 TEX9Q8N6V9 391 aa21.34■■□□□ 1.01
SDC3-202ENST00000339394 NEIL2Q969S2 332 aa21.34■■□□□ 1.01
SDC3-202ENST00000339394 MOCOSQ96EN8 888 aa21.34■■□□□ 1.01
SDC3-202ENST00000339394 TRAPPC9Q96Q05 1148 aa21.34■■□□□ 1.01
SDC3-202ENST00000339394 MLXIPLQ9NP71 852 aa21.34■■□□□ 1.01
SDC3-202ENST00000339394 ACSS2Q9NR19 701 aa21.34■■□□□ 1.01
SDC3-202ENST00000339394 PCTPQ9UKL6 214 aa21.34■■□□□ 1.01
SDC3-202ENST00000339394 UNC13CQ8NB66 2214 aa21.33■■□□□ 1.01
SDC3-202ENST00000339394 PRAMEF10O60809 474 aa21.33■■□□□ 1.01
SDC3-202ENST00000339394 RPS17P08708 135 aaKnown RBP21.33■■□□□ 1.01
SDC3-202ENST00000339394 DHRS4L1P0CG22 281 aa21.33■■□□□ 1.01
SDC3-202ENST00000339394 EPB42P16452 691 aa21.33■■□□□ 1.01
SDC3-202ENST00000339394 EPORP19235 508 aa21.33■■□□□ 1.01
SDC3-202ENST00000339394 ALDH3A1P30838 453 aa21.33■■□□□ 1.01
SDC3-202ENST00000339394 HOXD11P31277 338 aaPredicted RBP21.33■■□□□ 1.01
SDC3-202ENST00000339394 GRIA3P42263 894 aa21.33■■□□□ 1.01
SDC3-202ENST00000339394 DNAJB13P59910 316 aa21.33■■□□□ 1.01
SDC3-202ENST00000339394 PUM1Q14671 1186 aaKnown RBP eCLIP21.33■■□□□ 1.01
SDC3-202ENST00000339394 LIPMQ5VYY2 423 aa21.33■■□□□ 1.01
SDC3-202ENST00000339394 RPS27LQ71UM5 84 aaKnown RBP21.33■■□□□ 1.01
SDC3-202ENST00000339394 SNX31Q8N9S9 440 aa21.33■■□□□ 1.01
SDC3-202ENST00000339394 ADAMTS14Q8WXS8 1223 aa21.33■■□□□ 1.01
SDC3-202ENST00000339394 ZUFSPQ96AP4 578 aa21.33■■□□□ 1.01
SDC3-202ENST00000339394 L3HYPDHQ96EM0 354 aa21.33■■□□□ 1.01
SDC3-202ENST00000339394 TMEM74Q96NL1 305 aa21.33■■□□□ 1.01
SDC3-202ENST00000339394 DPH7Q9BTV6 452 aa21.33■■□□□ 1.01
SDC3-202ENST00000339394 ZNF768Q9H5H4 540 aaKnown RBP21.33■■□□□ 1.01
SDC3-202ENST00000339394 SLC6A20Q9NP91 592 aa21.33■■□□□ 1.01
SDC3-202ENST00000339394 CUEDC1Q9NWM3 386 aaPredicted RBP21.33■■□□□ 1.01
SDC3-202ENST00000339394 NKIRAS1Q9NYS0 192 aa21.33■■□□□ 1.01
SDC3-202ENST00000339394 CLCA2Q9UQC9 943 aa21.33■■□□□ 1.01
SDC3-202ENST00000339394 DYRK1BQ9Y463 629 aa21.33■■□□□ 1.01
SDC3-202ENST00000339394 ANKRD12Q6UB98 2062 aa21.33■■□□□ 1.01
SDC3-202ENST00000339394 H7BY64 318 aa21.32■■□□□ 1
SDC3-202ENST00000339394 SUPT7LO94864 414 aa21.32■■□□□ 1
SDC3-202ENST00000339394 ZBTB11O95625 1053 aaPredicted RBP21.32■■□□□ 1
SDC3-202ENST00000339394 BPGMP07738 259 aa21.32■■□□□ 1
SDC3-202ENST00000339394 ANKRD34CP0C6C1 535 aa21.32■■□□□ 1
SDC3-202ENST00000339394 CDH1P12830 882 aa21.32■■□□□ 1
SDC3-202ENST00000339394 GNAZP19086 355 aa21.32■■□□□ 1
SDC3-202ENST00000339394 SEPHS1P49903 392 aa21.32■■□□□ 1
SDC3-202ENST00000339394 NAGLUP54802 743 aa21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms