RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 PCM1Q15154 2024 aa17.81■□□□□ 0.44
USP39-201ENST00000323701 LRRC72A6NJI9 287 aa17.8■□□□□ 0.44
USP39-201ENST00000323701 FPGTO14772 594 aa17.8■□□□□ 0.44
USP39-201ENST00000323701 UGDHO60701 494 aa17.8■□□□□ 0.44
USP39-201ENST00000323701 HNRNPA2B1P22626 353 aaKnown RBP17.8■□□□□ 0.44
USP39-201ENST00000323701 PSMB5P28074 263 aa17.8■□□□□ 0.44
USP39-201ENST00000323701 DGKEP52429 567 aa17.8■□□□□ 0.44
USP39-201ENST00000323701 DGKQP52824 942 aa17.8■□□□□ 0.44
USP39-201ENST00000323701 MS4A2Q01362 244 aa17.8■□□□□ 0.44
USP39-201ENST00000323701 GRIK2Q13002 908 aa17.8■□□□□ 0.44
USP39-201ENST00000323701 CCNIQ14094 377 aa17.8■□□□□ 0.44
USP39-201ENST00000323701 E2F2Q14209 437 aa17.8■□□□□ 0.44
USP39-201ENST00000323701 GRHL2Q6ISB3 625 aa17.8■□□□□ 0.44
USP39-201ENST00000323701 DEFB123Q8N688 67 aa17.8■□□□□ 0.44
USP39-201ENST00000323701 ZNF740Q8NDX6 193 aa17.8■□□□□ 0.44
USP39-201ENST00000323701 TPSD1Q9BZJ3 242 aa17.8■□□□□ 0.44
USP39-201ENST00000323701 RNPEPL1Q9HAU8 725 aa17.8■□□□□ 0.44
USP39-201ENST00000323701 ZIM2Q9NZV7 527 aa17.8■□□□□ 0.44
USP39-201ENST00000323701 ACSL5Q9ULC5 683 aa17.8■□□□□ 0.44
USP39-201ENST00000323701 IFRD1O00458 451 aaPredicted RBP17.8■□□□□ 0.44
USP39-201ENST00000323701 CIB2O75838 187 aa17.8■□□□□ 0.44
USP39-201ENST00000323701 BCKDHAP12694 445 aa17.8■□□□□ 0.44
USP39-201ENST00000323701 TCN1P20061 433 aaPredicted RBP17.8■□□□□ 0.44
USP39-201ENST00000323701 KELP23276 732 aa17.8■□□□□ 0.44
USP39-201ENST00000323701 AK4P27144 223 aaPredicted RBP17.8■□□□□ 0.44
USP39-201ENST00000323701 PXNP49023 591 aaPredicted RBP17.8■□□□□ 0.44
USP39-201ENST00000323701 CAPRIN1Q14444 709 aaKnown RBP17.8■□□□□ 0.44
USP39-201ENST00000323701 UBXN2BQ14CS0 331 aa17.8■□□□□ 0.44
USP39-201ENST00000323701 TLR1Q15399 786 aa17.8■□□□□ 0.44
USP39-201ENST00000323701 LINC01555Q8NAE3 123 aa17.8■□□□□ 0.44
USP39-201ENST00000323701 HIPK4Q8NE63 616 aa17.8■□□□□ 0.44
USP39-201ENST00000323701 OR7G3Q8NG95 312 aa17.8■□□□□ 0.44
USP39-201ENST00000323701 SGK2Q9HBY8 427 aa17.8■□□□□ 0.44
USP39-201ENST00000323701 POLMQ9NP87 494 aaPredicted RBP17.8■□□□□ 0.44
USP39-201ENST00000323701 CCDC177Q9NQR7 707 aaPredicted RBP17.8■□□□□ 0.44
USP39-201ENST00000323701 IMP3Q9NV31 184 aaKnown RBP17.8■□□□□ 0.44
USP39-201ENST00000323701 PRPF19Q9UMS4 504 aaKnown RBP17.8■□□□□ 0.44
USP39-201ENST00000323701 NDUFAF1Q9Y375 327 aa17.8■□□□□ 0.44
USP39-201ENST00000323701 A0A1W2PP18 115 aa17.79■□□□□ 0.44
USP39-201ENST00000323701 MAGEB17A8MXT2 336 aa17.79■□□□□ 0.44
USP39-201ENST00000323701 H0YIV9 168 aa17.79■□□□□ 0.44
USP39-201ENST00000323701 ERGP11308 486 aa17.79■□□□□ 0.44
USP39-201ENST00000323701 CASP2P42575 452 aa17.79■□□□□ 0.44
USP39-201ENST00000323701 KIAA1024LP59773 190 aa17.79■□□□□ 0.44
USP39-201ENST00000323701 NFATC4Q14934 902 aa17.79■□□□□ 0.44
USP39-201ENST00000323701 TRMT5Q32P41 509 aaKnown RBP17.79■□□□□ 0.44
USP39-201ENST00000323701 USP39Q53GS9 565 aaKnown RBP17.79■□□□□ 0.44
USP39-201ENST00000323701 TMEM145Q8NBT3 493 aa17.79■□□□□ 0.44
USP39-201ENST00000323701 DENND6BQ8NEG7 585 aa17.79■□□□□ 0.44
USP39-201ENST00000323701 EGLN2Q96KS0 407 aa17.79■□□□□ 0.44
USP39-201ENST00000323701 XKR8Q9H6D3 395 aa17.79■□□□□ 0.44
USP39-201ENST00000323701 RMI1Q9H9A7 625 aa17.79■□□□□ 0.44
USP39-201ENST00000323701 FAM234BA2RU67 622 aa17.79■□□□□ 0.44
USP39-201ENST00000323701 ANGPT2O15123 496 aa17.79■□□□□ 0.44
USP39-201ENST00000323701 IGLV3-19P01714 112 aa17.79■□□□□ 0.44
USP39-201ENST00000323701 ATXN3P54252 364 aaPredicted RBP17.79■□□□□ 0.44
USP39-201ENST00000323701 KCNK10P57789 538 aa17.79■□□□□ 0.44
USP39-201ENST00000323701 THEMIS2Q5TEJ8 643 aa17.79■□□□□ 0.44
USP39-201ENST00000323701 BIRC7Q96CA5 298 aa17.79■□□□□ 0.44
USP39-201ENST00000323701 FERD3LQ96RJ6 166 aa17.79■□□□□ 0.44
USP39-201ENST00000323701 GPATCH1Q9BRR8 931 aaKnown RBP17.79■□□□□ 0.44
USP39-201ENST00000323701 TRIT1Q9H3H1 467 aaKnown RBP17.79■□□□□ 0.44
USP39-201ENST00000323701 ADA2Q9NZK5 511 aa17.79■□□□□ 0.44
USP39-201ENST00000323701 TBC1D29Q9UFV1 150 aa17.79■□□□□ 0.44
USP39-201ENST00000323701 A0A1W2PPV9 198 aa17.78■□□□□ 0.44
USP39-201ENST00000323701 PRORSD1PA6NEY8 169 aa17.78■□□□□ 0.44
USP39-201ENST00000323701 CHURC1-FNTBB4DL54 471 aa17.78■□□□□ 0.44
USP39-201ENST00000323701 KIF1CO43896 1103 aaKnown RBP17.78■□□□□ 0.44
USP39-201ENST00000323701 PSMG1O95456 288 aa17.78■□□□□ 0.44
USP39-201ENST00000323701 HNF4AP41235 474 aa17.78■□□□□ 0.44
USP39-201ENST00000323701 RCN1Q15293 331 aa17.78■□□□□ 0.44
USP39-201ENST00000323701 SLC2A7Q6PXP3 512 aa17.78■□□□□ 0.44
USP39-201ENST00000323701 SLC22A18ASQ8N1D0 253 aa17.78■□□□□ 0.44
USP39-201ENST00000323701 HUS1BQ8NHY5 278 aa17.78■□□□□ 0.44
USP39-201ENST00000323701 APOLD1Q96LR9 279 aa17.78■□□□□ 0.44
USP39-201ENST00000323701 GPR174Q9BXC1 333 aa17.78■□□□□ 0.44
USP39-201ENST00000323701 TMEM168Q9H0V1 697 aa17.78■□□□□ 0.44
USP39-201ENST00000323701 SPATA6Q9NWH7 488 aaPredicted RBP17.78■□□□□ 0.44
USP39-201ENST00000323701 GPRC5BQ9NZH0 403 aa17.78■□□□□ 0.44
USP39-201ENST00000323701 EIF3LQ9Y262 564 aaKnown RBP17.78■□□□□ 0.44
USP39-201ENST00000323701 CCDC154A6NI56 674 aa17.77■□□□□ 0.44
USP39-201ENST00000323701 FAM170BA6NMN3 283 aa17.77■□□□□ 0.44
USP39-201ENST00000323701 BBIP1A8MTZ0 92 aa17.77■□□□□ 0.44
USP39-201ENST00000323701 PDZK1P1A8MUH7 402 aa17.77■□□□□ 0.44
USP39-201ENST00000323701 MAP3K7O43318 606 aa17.77■□□□□ 0.44
USP39-201ENST00000323701 ANP32DO95626 131 aa17.77■□□□□ 0.44
USP39-201ENST00000323701 HOXC4P09017 264 aaPredicted RBP17.77■□□□□ 0.44
USP39-201ENST00000323701 PCNAP12004 261 aa17.77■□□□□ 0.44
USP39-201ENST00000323701 CDH1P12830 882 aa17.77■□□□□ 0.44
USP39-201ENST00000323701 AMD1P17707 334 aa17.77■□□□□ 0.44
USP39-201ENST00000323701 JAK1P23458 1154 aa17.77■□□□□ 0.44
USP39-201ENST00000323701 PRPH2P23942 346 aa17.77■□□□□ 0.44
USP39-201ENST00000323701 CCND1P24385 295 aa17.77■□□□□ 0.44
USP39-201ENST00000323701 CTBSQ01459 385 aa17.77■□□□□ 0.44
USP39-201ENST00000323701 SLBPQ14493 270 aaKnown RBP eCLIP17.77■□□□□ 0.44
USP39-201ENST00000323701 PRAMEF14Q5SWL7 426 aa17.77■□□□□ 0.44
USP39-201ENST00000323701 PRAMEF13Q5VWM6 474 aa17.77■□□□□ 0.44
USP39-201ENST00000323701 TLDC1Q6P9B6 456 aa17.77■□□□□ 0.44
USP39-201ENST00000323701 HACD2Q6Y1H2 254 aa17.77■□□□□ 0.44
USP39-201ENST00000323701 TBC1D21Q8IYX1 336 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms