RNA–Protein interactions for RNA: ENST00000322213.8

SMC1A-201, Transcript of structural maintenance of chromosomes 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC1A, Length 9,784 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-201ENST00000322213 SPPL2BQ8TCT7 592 aa6.9□□□□□ -1.31
SMC1A-201ENST00000322213 CNDP2Q96KP4 475 aaKnown RBP6.9□□□□□ -1.31
SMC1A-201ENST00000322213 TMED9Q9BVK6 235 aa6.9□□□□□ -1.31
SMC1A-201ENST00000322213 C9IYK1 514 aa6.9□□□□□ -1.31
SMC1A-201ENST00000322213 RPP40O75818 363 aaKnown RBP6.9□□□□□ -1.31
SMC1A-201ENST00000322213 SRPRAP08240 638 aaKnown RBP6.9□□□□□ -1.31
SMC1A-201ENST00000322213 LPOP22079 712 aaPredicted RBP6.9□□□□□ -1.31
SMC1A-201ENST00000322213 RPS3AP61247 264 aaKnown RBP6.9□□□□□ -1.31
SMC1A-201ENST00000322213 CDKL1Q00532 357 aa6.9□□□□□ -1.31
SMC1A-201ENST00000322213 ESCO2Q56NI9 601 aa6.9□□□□□ -1.31
SMC1A-201ENST00000322213 SCIMPQ6UWF3 145 aa6.9□□□□□ -1.31
SMC1A-201ENST00000322213 ZC3HC1Q86WB0 502 aaKnown RBP6.9□□□□□ -1.31
SMC1A-201ENST00000322213 RPLP0P6Q8NHW5 317 aa6.9□□□□□ -1.31
SMC1A-201ENST00000322213 PIGXQ8TBF5 258 aa6.9□□□□□ -1.31
SMC1A-201ENST00000322213 ZFP3Q96NJ6 502 aa6.9□□□□□ -1.31
SMC1A-201ENST00000322213 SIAEQ9HAT2 523 aa6.9□□□□□ -1.31
SMC1A-201ENST00000322213 TREM1Q9NP99 234 aa6.9□□□□□ -1.31
SMC1A-201ENST00000322213 ZNF175Q9Y473 711 aa6.9□□□□□ -1.31
SMC1A-201ENST00000322213 ANXA2P2A6NMY6 339 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 LRRN3E7EW58 273 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 M0R2N6 131 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 CBX4O00257 560 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 CREBL2O60519 120 aaPredicted RBP6.89□□□□□ -1.31
SMC1A-201ENST00000322213 CDRT1O95170 752 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 FUCA1P04066 466 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 CSF2P04141 144 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 THP07101 528 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 ANXA2P07355 339 aaKnown RBP6.89□□□□□ -1.31
SMC1A-201ENST00000322213 DARSP14868 501 aaKnown RBP6.89□□□□□ -1.31
SMC1A-201ENST00000322213 PTPN1P18031 435 aaKnown RBP6.89□□□□□ -1.31
SMC1A-201ENST00000322213 LHCGRP22888 699 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 CD79BP40259 229 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 PTPN9P43378 593 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 RPS5P46782 204 aaKnown RBP6.89□□□□□ -1.31
SMC1A-201ENST00000322213 PCDH1Q08174 1060 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 FAM209AQ5JX71 171 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 TMEM86AQ8N2M4 240 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 TXNDC5Q8NBS9 432 aaKnown RBP6.89□□□□□ -1.31
SMC1A-201ENST00000322213 HSPA12BQ96MM6 686 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 LRRN3Q9H3W5 708 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 ZNF282Q9UDV7 671 aaPredicted RBP6.89□□□□□ -1.31
SMC1A-201ENST00000322213 TMX2Q9Y320 296 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 EML5Q05BV3 1969 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 KIAA1549LQ6ZVL6 1849 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 TMEM233B4DJY2 109 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 B4GALT4O60513 344 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 HSD17B1P14061 328 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 SPP2Q13103 211 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 TSPYL5Q86VY4 417 aaPredicted RBP6.89□□□□□ -1.31
SMC1A-201ENST00000322213 SVBPQ8N300 66 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 C12orf29Q8N999 325 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 PCDHGB5Q9Y5G0 923 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 COL5A2P05997 1499 aaPredicted RBP6.89□□□□□ -1.31
SMC1A-201ENST00000322213 MEIOCA2RUB1 952 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 SNAPC2Q13487 334 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 NPY5RQ15761 445 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 ZNF782Q6ZMW2 699 aaPredicted RBP6.89□□□□□ -1.31
SMC1A-201ENST00000322213 DSG4Q86SJ6 1040 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 ZFP90Q8TF47 636 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 SPIN1Q9Y657 262 aaPredicted RBP6.89□□□□□ -1.31
SMC1A-201ENST00000322213 ABCA4P78363 2273 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 HCN1O60741 890 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 HPGDP15428 266 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 UBA1P22314 1058 aaKnown RBP6.89□□□□□ -1.31
SMC1A-201ENST00000322213 GK2Q14410 553 aaPredicted RBP6.89□□□□□ -1.31
SMC1A-201ENST00000322213 RHBDF2Q6PJF5 856 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 COMMD2Q86X83 199 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 OR10H4Q8NGA5 316 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 OR5T2Q8NGG2 359 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 TCTEX1D2Q8WW35 142 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 IFT27Q9BW83 186 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 CST11Q9H112 138 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 IFT46Q9NQC8 304 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 BIN3Q9NQY0 253 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 AJAP1Q9UKB5 411 aaPredicted RBP6.89□□□□□ -1.31
SMC1A-201ENST00000322213 PCDH15Q96QU1 1955 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 C2CD4BA6NLJ0 364 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 C9JVG2 144 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 PPP1R26Q5T8A7 1209 aaPredicted RBP6.89□□□□□ -1.31
SMC1A-201ENST00000322213 LCLAT1Q6UWP7 414 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 DHRS4Q9BTZ2 278 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 ZYG11BQ9C0D3 744 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 SYNDIG1Q9H7V2 258 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 ZFYVE1Q9HBF4 777 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 NKIRAS2Q9NYR9 191 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 CHURC1-FNTBB4DL54 471 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 ICAM3P32942 547 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 SMSP52788 366 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 OAZ1P54368 228 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 NCS1P62166 190 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 MADCAM1Q13477 382 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 LINC00471Q8N535 108 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 MFSD3Q96ES6 412 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 LIN7BQ9HAP6 207 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 KCNK13Q9HB14 408 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 TMEM181Q9P2C4 612 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 DCCP43146 1447 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 COL24A1Q17RW2 1714 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 PRPS2P11908 318 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 FPR1P21462 350 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms