RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 GPALPP1Q8IXQ4 340 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 KLHL36Q8N4N3 616 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 ADAMTS15Q8TE58 950 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 CCDC107Q8WV48 283 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 PRICKLE1Q96MT3 831 aaPredicted RBP11.24□□□□□ -0.61
VPS39-201ENST00000318006 NMUR1Q9HB89 426 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 USP29Q9HBJ7 922 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 TIGARQ9NQ88 270 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 TAS2R9Q9NYW1 312 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 ZNF282Q9UDV7 671 aaPredicted RBP11.24□□□□□ -0.61
VPS39-201ENST00000318006 GPSM3Q9Y4H4 160 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 ZNF780BQ9Y6R6 833 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 A0A1B0GVG6 124 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 GABRDO14764 452 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 DCLK1O15075 740 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 CAPN15O75808 1086 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 SCGNO76038 276 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 CDK14O94921 469 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 CHRNA1P02708 482 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 CD247P20963 164 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 LCN1P31025 176 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 CHRNA4P43681 627 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 PRMT2P55345 433 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 ADAM8P78325 824 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 CAMK1Q14012 370 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 ZNF311Q5JNZ3 666 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 OR9I1Q8NGQ6 314 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 AP2M1Q96CW1 435 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 HEPHQ9BQS7 1158 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 PAK1IP1Q9NWT1 392 aaPredicted RBP11.23□□□□□ -0.61
VPS39-201ENST00000318006 FKBP7Q9Y680 259 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 COL18A1P39060 1754 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 FXYD6-FXYD2A0A087WZ82 144 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 TLR4O00206 839 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 NRP1O14786 923 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 HCN1O60741 890 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 RASAL1O95294 804 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 ESR1P03372 595 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 NFATC3Q12968 1075 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 TARDBPQ13148 414 aaKnown RBP eCLIP11.23□□□□□ -0.61
VPS39-201ENST00000318006 ATP6AP1Q15904 470 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 C6orf141Q5SZD1 244 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 C9orf64Q5T6V5 341 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 KIAA1614Q5VZ46 1190 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 FRRS1Q6ZNA5 592 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 INO80EQ8NBZ0 244 aaPredicted RBP11.23□□□□□ -0.61
VPS39-201ENST00000318006 WACQ9BTA9 647 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 TRIM2Q9C040 744 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 FXYD6Q9H0Q3 95 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 ITM2CQ9NQX7 267 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 UBQLN2Q9UHD9 624 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 FCF1Q9Y324 198 aaKnown RBP11.23□□□□□ -0.61
VPS39-201ENST00000318006 ENTPD6O75354 484 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 FGF3P11487 239 aaPredicted RBP11.23□□□□□ -0.61
VPS39-201ENST00000318006 CLCN4P51793 760 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 HEPACAMQ14CZ8 416 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 USF2Q15853 346 aaPredicted RBP11.23□□□□□ -0.61
VPS39-201ENST00000318006 HFE2Q6ZVN8 426 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 SYVN1Q86TM6 617 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.23□□□□□ -0.61
VPS39-201ENST00000318006 OR10H4Q8NGA5 316 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 TMEM203Q969S6 136 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 ZNF285Q96NJ3 590 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 BARD1Q99728 777 aaKnown RBP11.23□□□□□ -0.61
VPS39-201ENST00000318006 FAM83DQ9H4H8 585 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 CPNE5Q9HCH3 593 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 TREM1Q9NP99 234 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 CCM2LQ9NUG4 571 aaPredicted RBP11.23□□□□□ -0.61
VPS39-201ENST00000318006 FKBPLQ9UIM3 349 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 CDC40O60508 579 aaKnown RBP eCLIP11.23□□□□□ -0.61
VPS39-201ENST00000318006 ATG13O75143 517 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 OXSR1O95747 527 aaPredicted RBP11.23□□□□□ -0.61
VPS39-201ENST00000318006 LDOC1O95751 146 aaPredicted RBP11.23□□□□□ -0.61
VPS39-201ENST00000318006 SNAI1O95863 264 aaPredicted RBP11.23□□□□□ -0.61
VPS39-201ENST00000318006 TBX18O95935 607 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 HTR1BP28222 390 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 ECHS1P30084 290 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 CEBPGP53567 150 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 BTN2A1Q7KYR7 527 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 CHST9Q7L1S5 443 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 TMPRSS11BQ86T26 416 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 DNAJA4Q8WW22 397 aaPredicted RBP11.23□□□□□ -0.61
VPS39-201ENST00000318006 ESAMQ96AP7 390 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 IL4I1Q96RQ9 567 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 MAPKAP1Q9BPZ7 522 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 TTYH2Q9BSA4 534 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 FUZQ9BT04 418 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 CST11Q9H112 138 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 SEC14L4Q9UDX3 406 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 HCN2Q9UL51 889 aa11.23□□□□□ -0.61
VPS39-201ENST00000318006 RUVBL1Q9Y265 456 aaKnown RBP11.23□□□□□ -0.61
VPS39-201ENST00000318006 CPSF4LA6NMK7 179 aaKnown RBP11.22□□□□□ -0.61
VPS39-201ENST00000318006 PAPSS2O95340 614 aaPredicted RBP11.22□□□□□ -0.61
VPS39-201ENST00000318006 POP4O95707 220 aaKnown RBP11.22□□□□□ -0.61
VPS39-201ENST00000318006 SNAP29O95721 258 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 PTGER3P43115 390 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 SSR2P43308 183 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 XKP51811 444 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 PAMR1Q6UXH9 720 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 OSTM1Q86WC4 334 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms