RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 IL11RAQ14626 422 aa11.56□□□□□ -0.56
SCFD1-201ENST00000311943 SLC5A12Q1EHB4 618 aa11.56□□□□□ -0.56
SCFD1-201ENST00000311943 GLE1Q53GS7 698 aaKnown RBP11.56□□□□□ -0.56
SCFD1-201ENST00000311943 AGTRAPQ6RW13 159 aa11.56□□□□□ -0.56
SCFD1-201ENST00000311943 NEK10Q6ZWH5 1172 aa11.56□□□□□ -0.56
SCFD1-201ENST00000311943 PLD6Q8N2A8 252 aaKnown RBP11.56□□□□□ -0.56
SCFD1-201ENST00000311943 ZNF740Q8NDX6 193 aa11.56□□□□□ -0.56
SCFD1-201ENST00000311943 KCTD4Q8WVF5 259 aa11.56□□□□□ -0.56
SCFD1-201ENST00000311943 CPNE1Q99829 537 aa11.56□□□□□ -0.56
SCFD1-201ENST00000311943 PRORYQ9H606 182 aa11.56□□□□□ -0.56
SCFD1-201ENST00000311943 ARL15Q9NXU5 204 aa11.56□□□□□ -0.56
SCFD1-201ENST00000311943 CTNNAL1Q9UBT7 734 aa11.56□□□□□ -0.56
SCFD1-201ENST00000311943 HEATR5BQ9P2D3 2071 aa11.56□□□□□ -0.56
SCFD1-201ENST00000311943 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.55□□□□□ -0.56
SCFD1-201ENST00000311943 EIF2S1P05198 315 aaKnown RBP11.55□□□□□ -0.56
SCFD1-201ENST00000311943 ITGAXP20702 1163 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 CCNFP41002 786 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 GLRBP48167 497 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 VSX2P58304 361 aaPredicted RBP11.55□□□□□ -0.56
SCFD1-201ENST00000311943 ACY1Q03154 408 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 ZKSCAN8Q15776 578 aaPredicted RBP11.55□□□□□ -0.56
SCFD1-201ENST00000311943 HKDC1Q2TB90 917 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 CATSPEREQ5SY80 951 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 THEMIS2Q5TEJ8 643 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 UGT3A1Q6NUS8 523 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 CCDC81Q6ZN84 652 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 MCATQ8IVS2 390 aaKnown RBP11.55□□□□□ -0.56
SCFD1-201ENST00000311943 HMGCLL1Q8TB92 370 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 CT55Q8WUE5 264 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 CDKL2Q92772 493 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 CCDC138Q96M89 665 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 TSNARE1Q96NA8 513 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 CHST8Q9H2A9 424 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 PARVBQ9HBI1 364 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 PCMTD2Q9NV79 361 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 EURLQ9NYK6 297 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 TXNDC16Q9P2K2 825 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 KLHL42Q9P2K6 505 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 MTRF1LQ9UGC7 380 aaKnown RBP11.55□□□□□ -0.56
SCFD1-201ENST00000311943 MRPS2Q9Y399 296 aaKnown RBP11.55□□□□□ -0.56
SCFD1-201ENST00000311943 PCDHGA4Q9Y5G9 962 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 SEC16AO15027 2179 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 PIEZO2Q9H5I5 2752 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 MATN2O00339 956 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 TERTO14746 1132 aaKnown RBP11.55□□□□□ -0.56
SCFD1-201ENST00000311943 HAT1O14929 419 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 P2RX6O15547 441 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 LCMT2O60294 686 aaKnown RBP11.55□□□□□ -0.56
SCFD1-201ENST00000311943 CNOT3O75175 753 aaKnown RBP11.55□□□□□ -0.56
SCFD1-201ENST00000311943 KATNA1O75449 491 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 OR2B3O76000 313 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 B3GALT4O96024 378 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 ALDOAP04075 364 aaKnown RBP11.55□□□□□ -0.56
SCFD1-201ENST00000311943 SHBGP04278 402 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 PRB1P04280 392 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 CD1DP15813 335 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 TCN2P20062 427 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 DLSTP36957 453 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 RGS4P49798 205 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.55□□□□□ -0.56
SCFD1-201ENST00000311943 MANEAQ5SRI9 462 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 ICE2Q659A1 982 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 C6orf15Q6UXA7 325 aaPredicted RBP11.55□□□□□ -0.56
SCFD1-201ENST00000311943 CYS1Q717R9 158 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 KMT5CQ86Y97 462 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 SMPDL3AQ92484 453 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 NXNL1Q96CM4 212 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 CLIP3Q96DZ5 547 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 TCTN2Q96GX1 697 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 TXLNGYQ9BZA5 131 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 ACSS3Q9H6R3 686 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 LHX9Q9NQ69 397 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 ACSS2Q9NR19 701 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 SLC22A11Q9NSA0 550 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 IRAK4Q9NWZ3 460 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 PCDHB11Q9Y5F2 797 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 MAU2Q9Y6X3 613 aa11.55□□□□□ -0.56
SCFD1-201ENST00000311943 MDC1Q14676 2089 aaKnown RBP11.54□□□□□ -0.56
SCFD1-201ENST00000311943 LRRC14BA6NHZ5 514 aa11.54□□□□□ -0.56
SCFD1-201ENST00000311943 K7ENP7 123 aa11.54□□□□□ -0.56
SCFD1-201ENST00000311943 TAPBPO15533 448 aa11.54□□□□□ -0.56
SCFD1-201ENST00000311943 PRAMEF4O60810 478 aa11.54□□□□□ -0.56
SCFD1-201ENST00000311943 NPPBP16860 134 aa11.54□□□□□ -0.56
SCFD1-201ENST00000311943 STMN1P16949 149 aa11.54□□□□□ -0.56
SCFD1-201ENST00000311943 STX2P32856 288 aa11.54□□□□□ -0.56
SCFD1-201ENST00000311943 RPA3P35244 121 aaPredicted RBP11.54□□□□□ -0.56
SCFD1-201ENST00000311943 RORAP35398 523 aa11.54□□□□□ -0.56
SCFD1-201ENST00000311943 DEKP35659 375 aaKnown RBP11.54□□□□□ -0.56
SCFD1-201ENST00000311943 STAT5AP42229 794 aa11.54□□□□□ -0.56
SCFD1-201ENST00000311943 VSNL1P62760 191 aa11.54□□□□□ -0.56
SCFD1-201ENST00000311943 ERV3-1Q14264 604 aa11.54□□□□□ -0.56
SCFD1-201ENST00000311943 SLC29A2Q14542 456 aa11.54□□□□□ -0.56
SCFD1-201ENST00000311943 TMTC4Q5T4D3 741 aa11.54□□□□□ -0.56
SCFD1-201ENST00000311943 GRTP1Q5TC63 336 aa11.54□□□□□ -0.56
SCFD1-201ENST00000311943 PRAMEF9Q5VWM5 478 aa11.54□□□□□ -0.56
SCFD1-201ENST00000311943 ADNP2Q6IQ32 1131 aa11.54□□□□□ -0.56
SCFD1-201ENST00000311943 C16orf46Q6P387 395 aa11.54□□□□□ -0.56
SCFD1-201ENST00000311943 INO80CQ6PI98 192 aaPredicted RBP11.54□□□□□ -0.56
SCFD1-201ENST00000311943 SHISA6Q6ZSJ9 500 aa11.54□□□□□ -0.56
SCFD1-201ENST00000311943 ADCK2Q7Z695 626 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 145.1 ms