RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 TOR3AQ9H497 397 aa19.47■□□□□ 0.71
VPS53-201ENST00000291074 EBF1Q9UH73 591 aa19.47■□□□□ 0.71
VPS53-201ENST00000291074 GNGT2O14610 69 aa19.46■□□□□ 0.71
VPS53-201ENST00000291074 CEBPBP17676 345 aa19.46■□□□□ 0.71
VPS53-201ENST00000291074 MAPK1P28482 360 aa19.46■□□□□ 0.71
VPS53-201ENST00000291074 NNMTP40261 264 aa19.46■□□□□ 0.71
VPS53-201ENST00000291074 SH3BGRP55822 239 aaPredicted RBP19.46■□□□□ 0.71
VPS53-201ENST00000291074 MESP2Q0VG99 397 aa19.46■□□□□ 0.71
VPS53-201ENST00000291074 DOC2AQ14183 400 aa19.46■□□□□ 0.71
VPS53-201ENST00000291074 ACOX1Q15067 660 aa19.46■□□□□ 0.71
VPS53-201ENST00000291074 ZNF805Q5CZA5 627 aa19.46■□□□□ 0.71
VPS53-201ENST00000291074 SPESP1Q6UW49 350 aa19.46■□□□□ 0.71
VPS53-201ENST00000291074 NEK10Q6ZWH5 1172 aa19.46■□□□□ 0.71
VPS53-201ENST00000291074 SYT12Q8IV01 421 aa19.46■□□□□ 0.71
VPS53-201ENST00000291074 OR4K3Q96R72 315 aa19.46■□□□□ 0.71
VPS53-201ENST00000291074 IL23AQ9NPF7 189 aa19.46■□□□□ 0.71
VPS53-201ENST00000291074 TBC1D14Q9P2M4 693 aa19.46■□□□□ 0.71
VPS53-201ENST00000291074 COQ6Q9Y2Z9 468 aa19.46■□□□□ 0.71
VPS53-201ENST00000291074 TCF20Q9UGU0 1960 aaKnown RBP19.46■□□□□ 0.71
VPS53-201ENST00000291074 H0YAE9 185 aa19.46■□□□□ 0.71
VPS53-201ENST00000291074 AP2A2O94973 939 aa19.46■□□□□ 0.71
VPS53-201ENST00000291074 PDHA2P29803 388 aa19.46■□□□□ 0.71
VPS53-201ENST00000291074 UGT8Q16880 541 aa19.46■□□□□ 0.71
VPS53-201ENST00000291074 CES5AQ6NT32 575 aa19.46■□□□□ 0.71
VPS53-201ENST00000291074 AGTRAPQ6RW13 159 aa19.46■□□□□ 0.71
VPS53-201ENST00000291074 PARS2Q7L3T8 475 aaKnown RBP19.46■□□□□ 0.71
VPS53-201ENST00000291074 TECPR1Q7Z6L1 1165 aa19.46■□□□□ 0.71
VPS53-201ENST00000291074 C12orf40Q86WS4 652 aa19.46■□□□□ 0.71
VPS53-201ENST00000291074 TMEM159Q96B96 161 aa19.46■□□□□ 0.71
VPS53-201ENST00000291074 PHF12Q96QT6 1004 aa19.46■□□□□ 0.71
VPS53-201ENST00000291074 STOX2Q9P2F5 926 aaPredicted RBP19.46■□□□□ 0.71
VPS53-201ENST00000291074 CDC14AQ9UNH5 594 aa19.46■□□□□ 0.71
VPS53-201ENST00000291074 ERVK-11Q9UQG0 969 aa19.46■□□□□ 0.71
VPS53-201ENST00000291074 TMED5Q9Y3A6 229 aa19.46■□□□□ 0.71
VPS53-201ENST00000291074 U3KQV3 271 aa19.46■□□□□ 0.71
VPS53-201ENST00000291074 CHD9Q3L8U1 2897 aa19.45■□□□□ 0.7
VPS53-201ENST00000291074 TSPAN11A1L157 253 aa19.45■□□□□ 0.7
VPS53-201ENST00000291074 PER2O15055 1255 aa19.45■□□□□ 0.7
VPS53-201ENST00000291074 PSIP1O75475 530 aaKnown RBP19.45■□□□□ 0.7
VPS53-201ENST00000291074 ELFN1P0C7U0 828 aa19.45■□□□□ 0.7
VPS53-201ENST00000291074 PRKACGP22612 351 aa19.45■□□□□ 0.7
VPS53-201ENST00000291074 KIR3DL1P43629 444 aa19.45■□□□□ 0.7
VPS53-201ENST00000291074 PMS2P3Q13401 168 aa19.45■□□□□ 0.7
VPS53-201ENST00000291074 LIPIQ6XZB0 460 aa19.45■□□□□ 0.7
VPS53-201ENST00000291074 DPPA4Q7L190 304 aa19.45■□□□□ 0.7
VPS53-201ENST00000291074 GALNT10Q86SR1 603 aa19.45■□□□□ 0.7
VPS53-201ENST00000291074 TRIM74Q86UV6 250 aa19.45■□□□□ 0.7
VPS53-201ENST00000291074 LMNTD1Q8N9Z9 388 aa19.45■□□□□ 0.7
VPS53-201ENST00000291074 GLYATL1Q969I3 302 aa19.45■□□□□ 0.7
VPS53-201ENST00000291074 AP2M1Q96CW1 435 aa19.45■□□□□ 0.7
VPS53-201ENST00000291074 HHIPQ96QV1 700 aa19.45■□□□□ 0.7
VPS53-201ENST00000291074 THG1LQ9NWX6 298 aaKnown RBP19.45■□□□□ 0.7
VPS53-201ENST00000291074 IFT80Q9P2H3 777 aaPredicted RBP19.45■□□□□ 0.7
VPS53-201ENST00000291074 INSL6Q9Y581 213 aa19.45■□□□□ 0.7
VPS53-201ENST00000291074 RETP07949 1114 aa19.45■□□□□ 0.7
VPS53-201ENST00000291074 MMP12P39900 470 aa19.45■□□□□ 0.7
VPS53-201ENST00000291074 LEMD2Q8NC56 503 aa19.45■□□□□ 0.7
VPS53-201ENST00000291074 ST13P5Q8NFI4 369 aaPredicted RBP19.45■□□□□ 0.7
VPS53-201ENST00000291074 WDR20Q8TBZ3 569 aa19.45■□□□□ 0.7
VPS53-201ENST00000291074 ADAMTS16Q8TE57 1224 aa19.45■□□□□ 0.7
VPS53-201ENST00000291074 SDCCAG3Q96C92 435 aa19.45■□□□□ 0.7
VPS53-201ENST00000291074 MBOAT4Q96T53 435 aa19.45■□□□□ 0.7
VPS53-201ENST00000291074 OSBPL6Q9BZF3 934 aa19.45■□□□□ 0.7
VPS53-201ENST00000291074 POLR1BQ9H9Y6 1135 aa19.45■□□□□ 0.7
VPS53-201ENST00000291074 KPNA3O00505 521 aaPredicted RBP19.44■□□□□ 0.7
VPS53-201ENST00000291074 ETHE1O95571 254 aa19.44■□□□□ 0.7
VPS53-201ENST00000291074 SLC16A8O95907 504 aa19.44■□□□□ 0.7
VPS53-201ENST00000291074 PIGAP37287 484 aa19.44■□□□□ 0.7
VPS53-201ENST00000291074 ESRRGP62508 458 aa19.44■□□□□ 0.7
VPS53-201ENST00000291074 VAC14Q08AM6 782 aa19.44■□□□□ 0.7
VPS53-201ENST00000291074 ZBED5Q49AG3 693 aa19.44■□□□□ 0.7
VPS53-201ENST00000291074 PRSS36Q5K4E3 855 aa19.44■□□□□ 0.7
VPS53-201ENST00000291074 CCNYL2Q5T2Q4 361 aa19.44■□□□□ 0.7
VPS53-201ENST00000291074 CLECL1Q8IZS7 167 aa19.44■□□□□ 0.7
VPS53-201ENST00000291074 NELL1Q92832 810 aa19.44■□□□□ 0.7
VPS53-201ENST00000291074 PRM3Q9NNZ6 103 aa19.44■□□□□ 0.7
VPS53-201ENST00000291074 PPP2R2BQ00005 443 aa19.44■□□□□ 0.7
VPS53-201ENST00000291074 TMEM115Q12893 351 aaPredicted RBP19.44■□□□□ 0.7
VPS53-201ENST00000291074 DHCR24Q15392 516 aa19.44■□□□□ 0.7
VPS53-201ENST00000291074 NEDD8Q15843 81 aa19.44■□□□□ 0.7
VPS53-201ENST00000291074 LIPJQ5W064 366 aa19.44■□□□□ 0.7
VPS53-201ENST00000291074 OR52E4Q8NGH9 312 aa19.44■□□□□ 0.7
VPS53-201ENST00000291074 PNPT1Q8TCS8 783 aaKnown RBP19.44■□□□□ 0.7
VPS53-201ENST00000291074 CSGALNACT1Q8TDX6 532 aa19.44■□□□□ 0.7
VPS53-201ENST00000291074 ISOC1Q96CN7 298 aa19.44■□□□□ 0.7
VPS53-201ENST00000291074 REXO5Q96IC2 774 aaKnown RBP19.44■□□□□ 0.7
VPS53-201ENST00000291074 PANX1Q96RD7 426 aa19.44■□□□□ 0.7
VPS53-201ENST00000291074 OSBPL10Q9BXB5 764 aa19.44■□□□□ 0.7
VPS53-201ENST00000291074 AMBRA1Q9C0C7 1298 aa19.44■□□□□ 0.7
VPS53-201ENST00000291074 VPS29Q9UBQ0 182 aa19.44■□□□□ 0.7
VPS53-201ENST00000291074 NPIPB8E9PQR5 432 aa19.43■□□□□ 0.7
VPS53-201ENST00000291074 WNT9AO14904 365 aa19.43■□□□□ 0.7
VPS53-201ENST00000291074 YY2O15391 372 aa19.43■□□□□ 0.7
VPS53-201ENST00000291074 IL7RP16871 459 aa19.43■□□□□ 0.7
VPS53-201ENST00000291074 POLR2IP36954 125 aaKnown RBP19.43■□□□□ 0.7
VPS53-201ENST00000291074 WNT3P56703 355 aa19.43■□□□□ 0.7
VPS53-201ENST00000291074 SPIDRQ14159 915 aa19.43■□□□□ 0.7
VPS53-201ENST00000291074 LRRC23Q53EV4 343 aaPredicted RBP19.43■□□□□ 0.7
VPS53-201ENST00000291074 TMEM220Q6QAJ8 160 aa19.43■□□□□ 0.7
VPS53-201ENST00000291074 KCTD8Q6ZWB6 473 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms