RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 USP7Q93009 1102 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 FCRL1Q96LA6 429 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 PRDM12Q9H4Q4 367 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 KIF25Q9UIL4 384 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 JAG2Q9Y219 1238 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 ANXA2P2A6NMY6 339 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 SC5DO75845 299 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 MOCS2O96007 188 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-220ENST00000641603 ESR1P03372 595 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 ANXA2P07355 339 aaKnown RBP4.57□□□□□ -1.68
SCN1A-220ENST00000641603 MZF1P28698 734 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-220ENST00000641603 POLR2LP62875 67 aaKnown RBP4.57□□□□□ -1.68
SCN1A-220ENST00000641603 KCNAB2Q13303 367 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 C4orf46Q504U0 113 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 LBHQ53QV2 105 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-220ENST00000641603 SLC36A4Q6YBV0 504 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 SKA3Q8IX90 412 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 ADAMTS14Q8WXS8 1223 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 UTP4Q969X6 686 aaKnown RBP4.57□□□□□ -1.68
SCN1A-220ENST00000641603 PPCDCQ96CD2 204 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 PYURFQ96I23 114 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 KAZALD1Q96I82 304 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 CRAMP1Q96RY5 1269 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 OCSTAMPQ9BR26 566 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 PI4K2AQ9BTU6 479 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 POLR2J3Q9H1A7 115 aaKnown RBP4.57□□□□□ -1.68
SCN1A-220ENST00000641603 RGCCQ9H4X1 137 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 NEUROD4Q9HD90 331 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 MIOSQ9NXC5 875 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 TAS2R10Q9NYW0 307 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 MAFFQ9ULX9 164 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 FAM149AA5PLN7 773 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 FLRT2O43155 660 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 SLC22A5O76082 557 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 PPP3CBP16298 524 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 CA5AP35218 305 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 APLP1P51693 650 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 CDH15P55291 814 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 ZNHIT3Q15649 155 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-220ENST00000641603 UBXN11Q5T124 520 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 CERCAMQ5T4B2 595 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 FAM117BQ6P1L5 589 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 PAQR7Q86WK9 346 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 SP8Q8IXZ3 490 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 ACBD4Q8NC06 268 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 TRPV2Q9Y5S1 764 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 A0A096LPI6 279 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 OR6C65A6NJZ3 312 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 M0R036 132 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 BUD23O43709 281 aaKnown RBP4.56□□□□□ -1.68
SCN1A-220ENST00000641603 RPP40O75818 363 aaKnown RBP4.56□□□□□ -1.68
SCN1A-220ENST00000641603 GADD45GO95257 159 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 CPNE6O95741 557 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 LTFP02788 710 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 ZSCAN5DPP0CG00 497 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 ACADMP11310 421 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 TAS2R31P59538 309 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 CNTN2Q02246 1040 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 PDIA6Q15084 440 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 GAREM2Q75VX8 874 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 RHOUQ7L0Q8 258 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 SLC41A1Q8IVJ1 513 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 PAPD5Q8NDF8 572 aaKnown RBP4.56□□□□□ -1.68
SCN1A-220ENST00000641603 CDC14AQ9UNH5 594 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 SCAMP1O15126 338 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 XKP51811 444 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 CD47Q08722 323 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 SMARCB1Q12824 385 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 TSTQ16762 297 aaKnown RBP4.56□□□□□ -1.68
SCN1A-220ENST00000641603 LINGO2Q7L985 606 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 FAM20CQ8IXL6 584 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 FAM163AQ96GL9 167 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-220ENST00000641603 B3GNT5Q9BYG0 378 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 ZYG11BQ9C0D3 744 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 SIX2Q9NPC8 291 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 SLC35C2Q9NQQ7 365 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 UXTQ9UBK9 157 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-220ENST00000641603 DNAJC5BQ9UF47 199 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 SFMBT1Q9UHJ3 866 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 FNDC3AQ9Y2H6 1198 aaKnown RBP4.56□□□□□ -1.68
SCN1A-220ENST00000641603 HCN4Q9Y3Q4 1203 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-220ENST00000641603 FOXO6A8MYZ6 492 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 STK25O00506 426 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 FANCGO15287 622 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 PRAMEF12O95522 483 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 GTF2F2P13984 249 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 TGM4P49221 684 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 ZNF177Q13360 481 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-220ENST00000641603 DUSP6Q16828 381 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 IL31Q6EBC2 164 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 UQCC3Q6UW78 93 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 FAM131BQ86XD5 332 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 OR10G2Q8NGC3 310 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 OR52K1Q8NGK4 314 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 FANK1Q8TC84 345 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 UPF1Q92900 1129 aaKnown RBP eCLIP4.56□□□□□ -1.68
SCN1A-220ENST00000641603 NACC2Q96BF6 587 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 CLCC1Q96S66 551 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 ZNF382Q96SR6 550 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms