RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 ENPP5Q9UJA9 477 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 ABT1Q9ULW3 272 aaKnown RBP12.42□□□□□ -0.42
LINC00540-203ENST00000631321 ERVW-1Q9UQF0 538 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 ZNF510Q9Y2H8 683 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 KIAA1671Q9BY89 1806 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 GFYI3L273 518 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 BCKDKO14874 412 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 PRMT3O60678 531 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 PRAMEF4O60810 478 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 SEMG1P04279 462 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 GSNP06396 782 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 LHCGRP22888 699 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 CD70P32970 193 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 NEK2P51955 445 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 MAPK10P53779 464 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 SNRPD1P62314 119 aaKnown RBP12.41□□□□□ -0.42
LINC00540-203ENST00000631321 ZNF33BQ06732 778 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 ABRQ12979 859 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 CDK5R2Q13319 367 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 PRAMEF9Q5VWM5 478 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 ANKRD46Q86W74 232 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 RASGRP3Q8IV61 690 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 PIK3C3Q8NEB9 887 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 DDHD1Q8NEL9 900 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 CSGALNACT1Q8TDX6 532 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 NELL1Q92832 810 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 CCDC138Q96M89 665 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 NODALQ96S42 347 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 RAD21L1Q9H4I0 556 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 TM9SF3Q9HD45 589 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 IL1RAPQ9NPH3 570 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 B3GNT3Q9Y2A9 372 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 SNX5Q9Y5X3 404 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 HSPE1-MOB4S4R3N1 261 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 RFXANKO14593 260 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 UGT2B11O75310 529 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 ZBTB11O95625 1053 aaPredicted RBP12.41□□□□□ -0.42
LINC00540-203ENST00000631321 B3GALT4O96024 378 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 SRCP12931 536 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 JUNDP17535 347 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 HTR1BP28222 390 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 GP2P55259 537 aaKnown RBP12.41□□□□□ -0.42
LINC00540-203ENST00000631321 C21orf58P58505 322 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 GSTM4Q03013 218 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 PPP1R8Q12972 351 aaKnown RBP12.41□□□□□ -0.42
LINC00540-203ENST00000631321 ACOX1Q15067 660 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 DUOXA1Q1HG43 343 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 PGS1Q32NB8 556 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 PTCHD3Q3KNS1 767 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 PLEKHS1Q5SXH7 462 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 FRG2Q64ET8 278 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 DOK6Q6PKX4 331 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 GPR155Q7Z3F1 870 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 CD99L2Q8TCZ2 262 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 ASIC4Q96FT7 647 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 SCLYQ96I15 445 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 COX4I2Q96KJ9 171 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 FRG2BQ96QU4 278 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 SUV39H2Q9H5I1 410 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 DNAJC11Q9NVH1 559 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 BAG5Q9UL15 447 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 TMPRSS11EQ9UL52 423 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 MAFFQ9ULX9 164 aa12.41□□□□□ -0.42
LINC00540-203ENST00000631321 BCAS1O75363 584 aaPredicted RBP12.4□□□□□ -0.42
LINC00540-203ENST00000631321 HIST1H2AGP0C0S8 130 aaPredicted RBP12.4□□□□□ -0.42
LINC00540-203ENST00000631321 HIST1H2ADP20671 130 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 PRPS1L1P21108 318 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 IGFBP5P24593 272 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 ACVR2AP27037 513 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 KIR3DL1P43629 444 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 MLLT10P55197 1068 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 AP1S2P56377 157 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 SLC7A9P82251 487 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 PIGFQ07326 219 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 SLC14A1Q13336 389 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 AQP6Q13520 282 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 KEAP1Q14145 624 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 SPIDRQ14159 915 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 SLC44A4Q53GD3 710 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 CARD16Q5EG05 197 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 KDM4DQ6B0I6 523 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 OR2T5Q6IEZ7 315 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 CAPN13Q6MZZ7 669 aaPredicted RBP12.4□□□□□ -0.42
LINC00540-203ENST00000631321 NOXRED1Q6NXP6 359 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 CRTC3Q6UUV7 619 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.4□□□□□ -0.42
LINC00540-203ENST00000631321 RFLNAQ6ZTI6 216 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 CYP4Z1Q86W10 505 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 BBS7Q8IWZ6 715 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 CPA6Q8N4T0 437 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 SETD9Q8NE22 299 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 OR2T29Q8NH02 315 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 HIST1H2AHQ96KK5 128 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 HIST1H2AJQ99878 128 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 H2AFJQ9BTM1 129 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 CPEB1Q9BZB8 566 aaKnown RBP12.4□□□□□ -0.42
LINC00540-203ENST00000631321 AASDHPPTQ9NRN7 309 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 FBXO10Q9UK96 956 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 HS3ST2Q9Y278 367 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 COL4A6Q14031 1691 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms