RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 EMBQ6PCB8 327 aa17.45■□□□□ 0.38
CLN3-239ENST00000628023 INO80CQ6PI98 192 aaPredicted RBP17.45■□□□□ 0.38
CLN3-239ENST00000628023 MBOAT1Q6ZNC8 495 aa17.45■□□□□ 0.38
CLN3-239ENST00000628023 ADAMTSL2Q86TH1 951 aa17.45■□□□□ 0.38
CLN3-239ENST00000628023 RASGRP3Q8IV61 690 aa17.45■□□□□ 0.38
CLN3-239ENST00000628023 SPATA6LQ8N4H0 392 aa17.45■□□□□ 0.38
CLN3-239ENST00000628023 HMGCLL1Q8TB92 370 aa17.45■□□□□ 0.38
CLN3-239ENST00000628023 ZNF480Q8WV37 535 aa17.45■□□□□ 0.38
CLN3-239ENST00000628023 DCAKDQ8WVC6 231 aa17.45■□□□□ 0.38
CLN3-239ENST00000628023 SMPDL3AQ92484 453 aa17.45■□□□□ 0.38
CLN3-239ENST00000628023 DLG3Q92796 817 aa17.45■□□□□ 0.38
CLN3-239ENST00000628023 CCDC138Q96M89 665 aa17.45■□□□□ 0.38
CLN3-239ENST00000628023 PARD6BQ9BYG5 372 aa17.45■□□□□ 0.38
CLN3-239ENST00000628023 DERL2Q9GZP9 239 aa17.45■□□□□ 0.38
CLN3-239ENST00000628023 SNX15Q9NRS6 342 aa17.45■□□□□ 0.38
CLN3-239ENST00000628023 SLC39A1Q9NY26 324 aa17.45■□□□□ 0.38
CLN3-239ENST00000628023 UTP6Q9NYH9 597 aaKnown RBP17.45■□□□□ 0.38
CLN3-239ENST00000628023 ZNF180Q9UJW8 692 aa17.45■□□□□ 0.38
CLN3-239ENST00000628023 SSUH2Q9Y2M2 353 aa17.45■□□□□ 0.38
CLN3-239ENST00000628023 A0A087X1B8 175 aa17.44■□□□□ 0.38
CLN3-239ENST00000628023 B4E171 279 aa17.44■□□□□ 0.38
CLN3-239ENST00000628023 WISP3O95389 354 aaPredicted RBP17.44■□□□□ 0.38
CLN3-239ENST00000628023 GUCA1CO95843 209 aa17.44■□□□□ 0.38
CLN3-239ENST00000628023 SLC35E2BP0CK96 405 aa17.44■□□□□ 0.38
CLN3-239ENST00000628023 SLC5A2P31639 672 aa17.44■□□□□ 0.38
CLN3-239ENST00000628023 TSPAN7P41732 249 aa17.44■□□□□ 0.38
CLN3-239ENST00000628023 AP1S2P56377 157 aa17.44■□□□□ 0.38
CLN3-239ENST00000628023 RAB15P59190 212 aa17.44■□□□□ 0.38
CLN3-239ENST00000628023 ATP6V0D1P61421 351 aa17.44■□□□□ 0.38
CLN3-239ENST00000628023 SH3BP2P78314 561 aa17.44■□□□□ 0.38
CLN3-239ENST00000628023 KCNAB1Q14722 419 aa17.44■□□□□ 0.38
CLN3-239ENST00000628023 TSNQ15631 228 aaKnown RBP17.44■□□□□ 0.38
CLN3-239ENST00000628023 THEMIS2Q5TEJ8 643 aa17.44■□□□□ 0.38
CLN3-239ENST00000628023 CYB5D1Q6P9G0 228 aa17.44■□□□□ 0.38
CLN3-239ENST00000628023 SUSD1Q6UWL2 747 aa17.44■□□□□ 0.38
CLN3-239ENST00000628023 CCDC91Q7Z6B0 441 aa17.44■□□□□ 0.38
CLN3-239ENST00000628023 PPFIBP2Q8ND30 876 aa17.44■□□□□ 0.38
CLN3-239ENST00000628023 ANKRD7Q92527 254 aa17.44■□□□□ 0.38
CLN3-239ENST00000628023 USP7Q93009 1102 aa17.44■□□□□ 0.38
CLN3-239ENST00000628023 ALKBH8Q96BT7 664 aaKnown RBP17.44■□□□□ 0.38
CLN3-239ENST00000628023 SLC41A2Q96JW4 573 aa17.44■□□□□ 0.38
CLN3-239ENST00000628023 CCNL2Q96S94 520 aaPredicted RBP17.44■□□□□ 0.38
CLN3-239ENST00000628023 EGFL8Q99944 293 aa17.44■□□□□ 0.38
CLN3-239ENST00000628023 ACAT2Q9BWD1 397 aa17.44■□□□□ 0.38
CLN3-239ENST00000628023 PITPNM3Q9BZ71 974 aa17.44■□□□□ 0.38
CLN3-239ENST00000628023 EPB41L4BQ9H329 900 aa17.44■□□□□ 0.38
CLN3-239ENST00000628023 FANCEQ9HB96 536 aa17.44■□□□□ 0.38
CLN3-239ENST00000628023 PDE7BQ9NP56 450 aa17.44■□□□□ 0.38
CLN3-239ENST00000628023 INTS7Q9NVH2 962 aaKnown RBP17.44■□□□□ 0.38
CLN3-239ENST00000628023 SEMA5BQ9P283 1151 aa17.44■□□□□ 0.38
CLN3-239ENST00000628023 STOX2Q9P2F5 926 aaPredicted RBP17.44■□□□□ 0.38
CLN3-239ENST00000628023 IKZF3Q9UKT9 509 aa17.44■□□□□ 0.38
CLN3-239ENST00000628023 NOVA2Q9UNW9 492 aaKnown RBP17.44■□□□□ 0.38
CLN3-239ENST00000628023 ACOT9Q9Y305 439 aa17.44■□□□□ 0.38
CLN3-239ENST00000628023 PCDHB11Q9Y5F2 797 aa17.44■□□□□ 0.38
CLN3-239ENST00000628023 TRIM49D1C9J1S8 452 aa17.43■□□□□ 0.38
CLN3-239ENST00000628023 TUBBP07437 444 aa17.43■□□□□ 0.38
CLN3-239ENST00000628023 EBLN1P0CF75 366 aa17.43■□□□□ 0.38
CLN3-239ENST00000628023 ERGP11308 486 aa17.43■□□□□ 0.38
CLN3-239ENST00000628023 ST6GAL1P15907 406 aa17.43■□□□□ 0.38
CLN3-239ENST00000628023 PSMB5P28074 263 aa17.43■□□□□ 0.38
CLN3-239ENST00000628023 IMPA1P29218 277 aa17.43■□□□□ 0.38
CLN3-239ENST00000628023 ACY1Q03154 408 aa17.43■□□□□ 0.38
CLN3-239ENST00000628023 CLN3Q13286 438 aa17.43■□□□□ 0.38
CLN3-239ENST00000628023 TUBB3Q13509 450 aa17.43■□□□□ 0.38
CLN3-239ENST00000628023 DCAF12Q5T6F0 453 aa17.43■□□□□ 0.38
CLN3-239ENST00000628023 FAM20CQ8IXL6 584 aa17.43■□□□□ 0.38
CLN3-239ENST00000628023 C19orf47Q8N9M1 422 aaKnown RBP17.43■□□□□ 0.38
CLN3-239ENST00000628023 FLVCR1-AS1Q8TAF5 88 aa17.43■□□□□ 0.38
CLN3-239ENST00000628023 AENQ8WTP8 325 aaKnown RBP17.43■□□□□ 0.38
CLN3-239ENST00000628023 N4BP2L2Q92802 583 aaPredicted RBP17.43■□□□□ 0.38
CLN3-239ENST00000628023 MED8Q96G25 268 aa17.43■□□□□ 0.38
CLN3-239ENST00000628023 TRAPPC9Q96Q05 1148 aa17.43■□□□□ 0.38
CLN3-239ENST00000628023 OR6C1Q96RD1 312 aa17.43■□□□□ 0.38
CLN3-239ENST00000628023 TAAR9Q96RI9 348 aa17.43■□□□□ 0.38
CLN3-239ENST00000628023 MIPEPQ99797 713 aa17.43■□□□□ 0.38
CLN3-239ENST00000628023 CTRCQ99895 268 aa17.43■□□□□ 0.38
CLN3-239ENST00000628023 VPS11Q9H270 941 aa17.43■□□□□ 0.38
CLN3-239ENST00000628023 CCDC177Q9NQR7 707 aaPredicted RBP17.43■□□□□ 0.38
CLN3-239ENST00000628023 SIDT1Q9NXL6 827 aaKnown RBP17.43■□□□□ 0.38
CLN3-239ENST00000628023 PSMC3IPQ9P2W1 217 aaPredicted RBP17.43■□□□□ 0.38
CLN3-239ENST00000628023 BTRCQ9Y297 605 aa17.43■□□□□ 0.38
CLN3-239ENST00000628023 A0A096LPK6 155 aa17.42■□□□□ 0.38
CLN3-239ENST00000628023 IQANK1A0A1B0GTG1 560 aa17.42■□□□□ 0.38
CLN3-239ENST00000628023 HMX2A2RU54 273 aa17.42■□□□□ 0.38
CLN3-239ENST00000628023 SMIM23A6NLE4 172 aa17.42■□□□□ 0.38
CLN3-239ENST00000628023 POLR1CO15160 346 aaPredicted RBP17.42■□□□□ 0.38
CLN3-239ENST00000628023 NVLO15381 856 aaKnown RBP17.42■□□□□ 0.38
CLN3-239ENST00000628023 PRAMEF10O60809 474 aa17.42■□□□□ 0.38
CLN3-239ENST00000628023 CCNDBP1O95273 360 aa17.42■□□□□ 0.38
CLN3-239ENST00000628023 FKBP9O95302 570 aa17.42■□□□□ 0.38
CLN3-239ENST00000628023 ALDOAP04075 364 aaKnown RBP17.42■□□□□ 0.38
CLN3-239ENST00000628023 C2P06681 752 aa17.42■□□□□ 0.38
CLN3-239ENST00000628023 SNRPAP09012 282 aaKnown RBP17.42■□□□□ 0.38
CLN3-239ENST00000628023 LTA4HP09960 611 aaKnown RBP17.42■□□□□ 0.38
CLN3-239ENST00000628023 CD1DP15813 335 aa17.42■□□□□ 0.38
CLN3-239ENST00000628023 CMPK1P30085 196 aa17.42■□□□□ 0.38
CLN3-239ENST00000628023 HSD17B3P37058 310 aa17.42■□□□□ 0.38
CLN3-239ENST00000628023 TBPL1P62380 186 aa17.42■□□□□ 0.38
CLN3-239ENST00000628023 MC2RQ01718 297 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms