RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 CHST4Q8NCG5 386 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 PUM2Q8TB72 1066 aaKnown RBP eCLIP4.93□□□□□ -1.622e-6■■■■■ 33.6
VPS13D-214ENST00000620676 STAG3L4Q8TBR4 150 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 TUBA1CQ9BQE3 449 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 MYEF2Q9P2K5 600 aaKnown RBP4.93□□□□□ -1.62
VPS13D-214ENST00000620676 NRXN1Q9ULB1 1477 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 SLC15A5A6NIM6 579 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 SLC1A7O00341 560 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 SYN3O14994 580 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 TKTL1P51854 596 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 DIO3P55073 304 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 TRIM28Q13263 835 aaKnown RBP4.93□□□□□ -1.62
VPS13D-214ENST00000620676 HNRNPDQ14103 355 aaKnown RBP4.93□□□□□ -1.62
VPS13D-214ENST00000620676 PTPRCAPQ14761 206 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 XKR6Q5GH73 641 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 SELENOMQ8WWX9 145 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 ZNF641Q96N77 438 aaPredicted RBP4.93□□□□□ -1.62
VPS13D-214ENST00000620676 NR2F1P10589 423 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 DNASE1P24855 282 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 ACADSBP45954 432 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 SNTA1Q13424 505 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 KCNJ11Q14654 390 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 IQCCQ4KMZ1 466 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 ESRP1Q6NXG1 681 aaKnown RBP4.93□□□□□ -1.62
VPS13D-214ENST00000620676 FAM98AQ8NCA5 519 aaKnown RBP4.93□□□□□ -1.62
VPS13D-214ENST00000620676 ZDHHC1Q8WTX9 485 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 TCEAL4Q96EI5 215 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 RSPH9Q9H1X1 276 aaPredicted RBP4.93□□□□□ -1.62
VPS13D-214ENST00000620676 GALNT9Q9HCQ5 603 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 RPS10P5Q9NQ39 176 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 PCDHAC2Q9Y5I4 1007 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 GCAP28676 217 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 PCBP1Q15365 356 aaKnown RBP eCLIP4.93□□□□□ -1.621e-7■■■■■ 26.9
VPS13D-214ENST00000620676 LYSMD3Q7Z3D4 306 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 PHF13Q86YI8 300 aaPredicted RBP4.93□□□□□ -1.62
VPS13D-214ENST00000620676 C20orf27Q9GZN8 174 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 KCND2Q9NZV8 630 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 CBY3A6NI87 242 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 ENGP17813 658 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 ZXDBP98169 803 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 LRRC38Q5VT99 294 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 ZNF627Q7L945 461 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 SPATA19Q7Z5L4 167 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 FAM83AQ86UY5 434 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 WDSUB1Q8N9V3 476 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 ATAD1Q8NBU5 361 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 TRMT10AQ8TBZ6 339 aaKnown RBP4.93□□□□□ -1.62
VPS13D-214ENST00000620676 TNIP3Q96KP6 325 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 APOLD1Q96LR9 279 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 MS4A7Q9GZW8 240 aaPredicted RBP4.93□□□□□ -1.62
VPS13D-214ENST00000620676 DHX33Q9H6R0 707 aaKnown RBP4.93□□□□□ -1.62
VPS13D-214ENST00000620676 CFAP97Q9P2B7 532 aa4.93□□□□□ -1.62
VPS13D-214ENST00000620676 HMX3A6NHT5 357 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 FTMTQ8N4E7 242 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 SPATA5L1Q9BVQ7 753 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 MATKP42679 507 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 IL2P60568 153 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 KCNC4Q03721 635 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 ANKRD34AQ69YU3 496 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 MAVSQ7Z434 540 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 OR2L5Q8NG80 312 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 CASTOR1Q8WTX7 329 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 COL26A1Q96A83 441 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 RFT1Q96AA3 541 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 DUSP16Q9BY84 665 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 YTHDF1Q9BYJ9 559 aaKnown RBP4.92□□□□□ -1.62
VPS13D-214ENST00000620676 RIMBP3CA6NJZ7 1639 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 RIMBP3BA6NNM3 1639 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 RIMBP3Q9UFD9 1639 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 PRMT5O14744 637 aaPredicted RBP4.92□□□□□ -1.62
VPS13D-214ENST00000620676 ALX3O95076 343 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 CREMQ03060 361 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 SMN1Q16637 294 aaKnown RBP4.92□□□□□ -1.62
VPS13D-214ENST00000620676 KANK2Q63ZY3 851 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 ARL9Q6T311 187 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 TMEM17Q86X19 198 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 YIPF4Q9BSR8 244 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 HDHD5Q9BXW7 423 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 ZYG11BQ9C0D3 744 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 CD93Q9NPY3 652 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 OVOS2A0A0J9YW53 1432 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 OVOS2Q6IE36 1432 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 MYO3AQ8NEV4 1616 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 KMOO15229 486 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 ZNF780AO75290 641 aaPredicted RBP4.92□□□□□ -1.62
VPS13D-214ENST00000620676 GCATO75600 419 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 SLC22A5O76082 557 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 CD1EP15812 388 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 CHMP24386 653 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 MECP2P51608 486 aaKnown RBP4.92□□□□□ -1.62
VPS13D-214ENST00000620676 EFNA5P52803 228 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 NFIXQ14938 502 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 EEF1DP3Q658K8 133 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 IDO2Q6ZQW0 420 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 TWNKQ96RR1 684 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 STRA6Q9BX79 667 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 NUDT15Q9NV35 164 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 PCDHA2Q9Y5H9 948 aa4.92□□□□□ -1.62
VPS13D-214ENST00000620676 TLX2O43763 284 aaPredicted RBP4.92□□□□□ -1.62
VPS13D-214ENST00000620676 CCL23P55773 120 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms