RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 OAS2P29728 719 aaKnown RBP19.03■□□□□ 0.64
UPF3A-211ENST00000618700 PRDX3P30048 256 aaKnown RBP19.03■□□□□ 0.64
UPF3A-211ENST00000618700 ZFP36L1Q07352 338 aaKnown RBP19.03■□□□□ 0.64
UPF3A-211ENST00000618700 SLC5A12Q1EHB4 618 aa19.03■□□□□ 0.64
UPF3A-211ENST00000618700 N4BP2L1Q5TBK1 243 aaPredicted RBP19.03■□□□□ 0.64
UPF3A-211ENST00000618700 DMRTA1Q5VZB9 504 aa19.03■□□□□ 0.64
UPF3A-211ENST00000618700 SULT1C3Q6IMI6 304 aa19.03■□□□□ 0.64
UPF3A-211ENST00000618700 C16orf46Q6P387 395 aa19.03■□□□□ 0.64
UPF3A-211ENST00000618700 SUSD1Q6UWL2 747 aa19.03■□□□□ 0.64
UPF3A-211ENST00000618700 PRSS42Q7Z5A4 293 aa19.03■□□□□ 0.64
UPF3A-211ENST00000618700 RAB44Q7Z6P3 723 aaPredicted RBP19.03■□□□□ 0.64
UPF3A-211ENST00000618700 B3GNT8Q7Z7M8 397 aa19.03■□□□□ 0.64
UPF3A-211ENST00000618700 EXOC3L1Q86VI1 746 aa19.03■□□□□ 0.64
UPF3A-211ENST00000618700 CARFQ8N187 725 aa19.03■□□□□ 0.64
UPF3A-211ENST00000618700 CACTIN-AS1Q8N1I8 211 aa19.03■□□□□ 0.64
UPF3A-211ENST00000618700 TCAIMQ8N3R3 496 aa19.03■□□□□ 0.64
UPF3A-211ENST00000618700 DCBLD1Q8N8Z6 715 aa19.03■□□□□ 0.64
UPF3A-211ENST00000618700 ALKBH8Q96BT7 664 aaKnown RBP19.03■□□□□ 0.64
UPF3A-211ENST00000618700 SMC6Q96SB8 1091 aa19.03■□□□□ 0.64
UPF3A-211ENST00000618700 TMEM79Q9BSE2 394 aa19.03■□□□□ 0.64
UPF3A-211ENST00000618700 ATG10Q9H0Y0 220 aa19.03■□□□□ 0.64
UPF3A-211ENST00000618700 SEMA6CQ9H3T2 930 aa19.03■□□□□ 0.64
UPF3A-211ENST00000618700 CCDC177Q9NQR7 707 aaPredicted RBP19.03■□□□□ 0.64
UPF3A-211ENST00000618700 CD274Q9NZQ7 290 aa19.03■□□□□ 0.64
UPF3A-211ENST00000618700 PTBP2Q9UKA9 531 aaKnown RBP19.03■□□□□ 0.64
UPF3A-211ENST00000618700 ACTL7BQ9Y614 415 aa19.03■□□□□ 0.64
UPF3A-211ENST00000618700 MED19A0JLT2 244 aaPredicted RBP19.02■□□□□ 0.64
UPF3A-211ENST00000618700 TLCD2A6NGC4 264 aa19.02■□□□□ 0.64
UPF3A-211ENST00000618700 GOLGA6L10A6NI86 522 aa19.02■□□□□ 0.64
UPF3A-211ENST00000618700 TAPBPO15533 448 aa19.02■□□□□ 0.64
UPF3A-211ENST00000618700 KIF1CO43896 1103 aaKnown RBP19.02■□□□□ 0.64
UPF3A-211ENST00000618700 PROCP04070 461 aa19.02■□□□□ 0.64
UPF3A-211ENST00000618700 ANKRD34CP0C6C1 535 aa19.02■□□□□ 0.64
UPF3A-211ENST00000618700 MPSTP25325 297 aa19.02■□□□□ 0.64
UPF3A-211ENST00000618700 PSMB5P28074 263 aa19.02■□□□□ 0.64
UPF3A-211ENST00000618700 CCKBRP32239 447 aa19.02■□□□□ 0.64
UPF3A-211ENST00000618700 GGT5P36269 586 aa19.02■□□□□ 0.64
UPF3A-211ENST00000618700 SLC6A12P48065 614 aa19.02■□□□□ 0.64
UPF3A-211ENST00000618700 LSSP48449 732 aa19.02■□□□□ 0.64
UPF3A-211ENST00000618700 CCT5P48643 541 aa19.02■□□□□ 0.64
UPF3A-211ENST00000618700 FOXK2Q01167 660 aa19.02■□□□□ 0.64
UPF3A-211ENST00000618700 NAE1Q13564 534 aa19.02■□□□□ 0.64
UPF3A-211ENST00000618700 FAM92BQ6ZTR7 304 aa19.02■□□□□ 0.64
UPF3A-211ENST00000618700 OR2A1Q8NGT9 310 aa19.02■□□□□ 0.64
UPF3A-211ENST00000618700 UBTD2Q8WUN7 234 aa19.02■□□□□ 0.64
UPF3A-211ENST00000618700 CCDC74BQ96LY2 380 aa19.02■□□□□ 0.64
UPF3A-211ENST00000618700 PPM1MQ96MI6 270 aa19.02■□□□□ 0.64
UPF3A-211ENST00000618700 MAP3K3Q99759 626 aa19.02■□□□□ 0.64
UPF3A-211ENST00000618700 SH3GL2Q99962 352 aa19.02■□□□□ 0.64
UPF3A-211ENST00000618700 STMN4Q9H169 189 aaPredicted RBP19.02■□□□□ 0.64
UPF3A-211ENST00000618700 GRID1Q9ULK0 1009 aa19.02■□□□□ 0.64
UPF3A-211ENST00000618700 ISM1B1AKI9 464 aa19.01■□□□□ 0.63
UPF3A-211ENST00000618700 TOX3O15405 576 aaPredicted RBP19.01■□□□□ 0.63
UPF3A-211ENST00000618700 TYROBPO43914 113 aa19.01■□□□□ 0.63
UPF3A-211ENST00000618700 PLIN3O60664 434 aa19.01■□□□□ 0.63
UPF3A-211ENST00000618700 IPO13O94829 963 aaKnown RBP19.01■□□□□ 0.63
UPF3A-211ENST00000618700 FKBP9O95302 570 aa19.01■□□□□ 0.63
UPF3A-211ENST00000618700 S100BP04271 92 aaPredicted RBP19.01■□□□□ 0.63
UPF3A-211ENST00000618700 CCND1P24385 295 aa19.01■□□□□ 0.63
UPF3A-211ENST00000618700 INHBCP55103 352 aa19.01■□□□□ 0.63
UPF3A-211ENST00000618700 TRA2AQ13595 282 aaKnown RBP eCLIP19.01■□□□□ 0.63
UPF3A-211ENST00000618700 SETDB1Q15047 1291 aa19.01■□□□□ 0.63
UPF3A-211ENST00000618700 C18orf21Q32NC0 220 aaPredicted RBP19.01■□□□□ 0.63
UPF3A-211ENST00000618700 PTCHD3Q3KNS1 767 aa19.01■□□□□ 0.63
UPF3A-211ENST00000618700 CCDC153Q494R4 210 aa19.01■□□□□ 0.63
UPF3A-211ENST00000618700 ARHGAP22Q7Z5H3 698 aa19.01■□□□□ 0.63
UPF3A-211ENST00000618700 TRIM73Q86UV7 250 aa19.01■□□□□ 0.63
UPF3A-211ENST00000618700 TMPRSS12Q86WS5 348 aa19.01■□□□□ 0.63
UPF3A-211ENST00000618700 TLCD1Q96CP7 247 aa19.01■□□□□ 0.63
UPF3A-211ENST00000618700 MED8Q96G25 268 aa19.01■□□□□ 0.63
UPF3A-211ENST00000618700 PKNOX2Q96KN3 472 aa19.01■□□□□ 0.63
UPF3A-211ENST00000618700 TMEM74Q96NL1 305 aa19.01■□□□□ 0.63
UPF3A-211ENST00000618700 DEPDC7Q96QD5 511 aa19.01■□□□□ 0.63
UPF3A-211ENST00000618700 SSU72Q9NP77 194 aaKnown RBP19.01■□□□□ 0.63
UPF3A-211ENST00000618700 C1GALT1Q9NS00 363 aa19.01■□□□□ 0.63
UPF3A-211ENST00000618700 WWOXQ9NZC7 414 aa19.01■□□□□ 0.63
UPF3A-211ENST00000618700 CPSF2Q9P2I0 782 aaKnown RBP19.01■□□□□ 0.63
UPF3A-211ENST00000618700 KLHL3Q9UH77 587 aa19.01■□□□□ 0.63
UPF3A-211ENST00000618700 TMCO1Q9UM00 188 aa19.01■□□□□ 0.63
UPF3A-211ENST00000618700 PCDHB11Q9Y5F2 797 aa19.01■□□□□ 0.63
UPF3A-211ENST00000618700 IGHV5-51A0A0C4DH38 117 aa19■□□□□ 0.63
UPF3A-211ENST00000618700 A0A0J9YY10 115 aa19■□□□□ 0.63
UPF3A-211ENST00000618700 GFAPP14136 432 aa19■□□□□ 0.63
UPF3A-211ENST00000618700 RPA3P35244 121 aaPredicted RBP19■□□□□ 0.63
UPF3A-211ENST00000618700 MLLT3P42568 568 aaPredicted RBP19■□□□□ 0.63
UPF3A-211ENST00000618700 ISXQ2M1V0 245 aa19■□□□□ 0.63
UPF3A-211ENST00000618700 PRAMEF13Q5VWM6 474 aa19■□□□□ 0.63
UPF3A-211ENST00000618700 CAPN13Q6MZZ7 669 aaPredicted RBP19■□□□□ 0.63
UPF3A-211ENST00000618700 FBXO39Q8N4B4 442 aa19■□□□□ 0.63
UPF3A-211ENST00000618700 OR2L3Q8NG85 312 aa19■□□□□ 0.63
UPF3A-211ENST00000618700 PYCR2Q96C36 320 aa19■□□□□ 0.63
UPF3A-211ENST00000618700 OR4K3Q96R72 315 aa19■□□□□ 0.63
UPF3A-211ENST00000618700 MIPEPQ99797 713 aa19■□□□□ 0.63
UPF3A-211ENST00000618700 ACAT2Q9BWD1 397 aa19■□□□□ 0.63
UPF3A-211ENST00000618700 PCBD2Q9H0N5 130 aa19■□□□□ 0.63
UPF3A-211ENST00000618700 C12orf65Q9H3J6 166 aaKnown RBP19■□□□□ 0.63
UPF3A-211ENST00000618700 ZNF768Q9H5H4 540 aaKnown RBP19■□□□□ 0.63
UPF3A-211ENST00000618700 INTS7Q9NVH2 962 aaKnown RBP19■□□□□ 0.63
UPF3A-211ENST00000618700 TAC3Q9UHF0 121 aa19■□□□□ 0.63
UPF3A-211ENST00000618700 CLCA2Q9UQC9 943 aa19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms