RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 CCL11P51671 97 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 CLDN2P57739 230 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 AP2B1P63010 937 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 NOP14P78316 857 aaKnown RBP4.29□□□□□ -1.72
LINC00540-201ENST00000611481 IFI35P80217 286 aaPredicted RBP4.29□□□□□ -1.72
LINC00540-201ENST00000611481 PPP2R2BQ00005 443 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 KHDRBS1Q07666 443 aaKnown RBP eCLIP4.29□□□□□ -1.72
LINC00540-201ENST00000611481 GOLGA8FQ08AF8 430 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 GOLGA8DPQ0D2H9 430 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 SCARB2Q14108 478 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 FZD2Q14332 565 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 RBMS2Q15434 407 aaKnown RBP4.29□□□□□ -1.72
LINC00540-201ENST00000611481 BAK1Q16611 211 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 JADE1Q6IE81 842 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 VSTM1Q6UX27 236 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 Q6ZSR6 202 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 UNC13DQ70J99 1090 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 CHST9Q7L1S5 443 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 GALNTL5Q7Z4T8 443 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 R3HCC1LQ7Z5L2 792 aaKnown RBP4.29□□□□□ -1.72
LINC00540-201ENST00000611481 PTAR1Q7Z6K3 402 aaPredicted RBP4.29□□□□□ -1.72
LINC00540-201ENST00000611481 CHD1LQ86WJ1 897 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 APLFQ8IW19 511 aaPredicted RBP4.29□□□□□ -1.72
LINC00540-201ENST00000611481 CEP57L1Q8IYX8 460 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 PDCL2Q8N4E4 241 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.29□□□□□ -1.72
LINC00540-201ENST00000611481 RBMXL3Q8N7X1 1067 aaKnown RBP4.29□□□□□ -1.72
LINC00540-201ENST00000611481 BICD2Q8TD16 824 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 MAML1Q92585 1016 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 MYLPFQ96A32 169 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 TBC1D31Q96DN5 1066 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 LYZL4Q96KX0 146 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 TWNKQ96RR1 684 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 MYCBPQ99417 103 aaPredicted RBP4.29□□□□□ -1.72
LINC00540-201ENST00000611481 NCAPGQ9BPX3 1015 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 DDA1Q9BW61 102 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 TWSG1Q9GZX9 223 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 PDCL3Q9H2J4 239 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 SYNCQ9H7C4 482 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 SMURF2Q9HAU4 748 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 NOD2Q9HC29 1040 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 MLXIPLQ9NP71 852 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 RBM28Q9NW13 759 aaKnown RBP4.29□□□□□ -1.72
LINC00540-201ENST00000611481 SLC39A1Q9NY26 324 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 MED16Q9Y2X0 877 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 SNX8Q9Y5X2 465 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 COPG1Q9Y678 874 aaKnown RBP4.29□□□□□ -1.72
LINC00540-201ENST00000611481 CNTRLQ7Z7A1 2325 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 FRMD3A2A2Y4 597 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 KPNA7A9QM74 516 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 GTPBP1O00178 669 aaKnown RBP4.28□□□□□ -1.72
LINC00540-201ENST00000611481 AP3D1O14617 1153 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 DSCR3O14972 297 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 SPTLC2O15270 562 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 TBCAO75347 108 aaKnown RBP4.28□□□□□ -1.72
LINC00540-201ENST00000611481 TSPAN9O75954 239 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 ALPLP05186 524 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 CSF1P09603 554 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 NPPBP16860 134 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 AKT2P31751 481 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 ABCD1P33897 745 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 KCNJ5P48544 419 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 THBS3P49746 956 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 CCR9P51686 369 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 PNLIPRP1P54315 467 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 PRKAA2P54646 552 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 SOX8P57073 446 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 FOXM1Q08050 763 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 Q0VFX4 171 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 SLC13A2Q13183 592 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 MAMLD1Q13495 774 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 RAB32Q13637 225 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 RASA2Q15283 850 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 CHRNA6Q15825 494 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 MAPKAPK3Q16644 382 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 DCAF10Q5QP82 559 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 RRAGBQ5VZM2 374 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 RINT1Q6NUQ1 792 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 KIRREL2Q6UWL6 708 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 SYNE3Q6ZMZ3 975 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 GCNT7Q6ZNI0 430 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 PARGQ86W56 976 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 TRIM69Q86WT6 500 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 PPP1R3BQ86XI6 285 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 ARMC8Q8IUR7 673 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 SLC44A2Q8IWA5 706 aaPredicted RBP4.28□□□□□ -1.72
LINC00540-201ENST00000611481 ZC3H3Q8IXZ2 948 aaKnown RBP4.28□□□□□ -1.72
LINC00540-201ENST00000611481 RBFAQ8N0V3 343 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 CCDC112Q8NEF3 446 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 WFDC11Q8NEX6 87 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 ABHD11Q8NFV4 315 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 OR8H1Q8NGG4 311 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 RSC1A1Q92681 617 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 SH3KBP1Q96B97 665 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 CEP295NLQ96MC4 621 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 HSD17B14Q9BPX1 270 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 LRRC2Q9BYS8 371 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 CCSER1Q9C0I3 900 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 CHST8Q9H2A9 424 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 MRPL46Q9H2W6 279 aaKnown RBP4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms