RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 SYBUQ9NX95 663 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 IL1RAPL1Q9NZN1 696 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 MAP10Q9P2G4 905 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 GALPQ9UBC7 116 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 SOX13Q9UN79 622 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 RUVBL2Q9Y230 463 aaKnown RBP7.3□□□□□ -1.24
CUX1-219ENST00000606749 KLK4Q9Y5K2 254 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 MRFAP1Q9Y605 127 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 ANKRD12Q6UB98 2062 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 FLNCQ14315 2725 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 SHANK1Q9Y566 2161 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 LOC105369274A0A096LPK9 316 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 LOC102723532A0A0G2JNH3 316 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 HYKKA2RU49 373 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 VSTM2BA6NLU5 285 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 H3BMM5 538 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 SOCS6O14544 535 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 CEP104O60308 925 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 AVILO75366 819 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 MED26O95402 600 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 CBX6O95503 412 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 ESR1P03372 595 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 TPSB2P20231 275 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 CHRM3P20309 590 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 CXCR5P32302 372 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 CCNFP41002 786 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 BDKRB1P46663 353 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 ADARP55265 1226 aaKnown RBP7.29□□□□□ -1.24
CUX1-219ENST00000606749 VSX2P58304 361 aaPredicted RBP7.29□□□□□ -1.24
CUX1-219ENST00000606749 YBX1P67809 324 aaKnown RBP7.29□□□□□ -1.24
CUX1-219ENST00000606749 FASTKQ14296 549 aaKnown RBP7.29□□□□□ -1.24
CUX1-219ENST00000606749 ESPL1Q14674 2120 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 TRIP13Q15645 432 aaPredicted RBP7.29□□□□□ -1.24
CUX1-219ENST00000606749 TPSAB1Q15661 275 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 TYSND1Q2T9J0 566 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 C4orf17Q53FE4 359 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 PRAMEF13Q5VWM6 474 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 FRMPD2BQ6IN97 320 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 CNSTQ6PJW8 725 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 KIRREL2Q6UWL6 708 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 Q6ZS92 163 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 OR4N4Q8N0Y3 316 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 ZADH2Q8N4Q0 377 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 RAB42Q8N4Z0 105 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 DTWD1Q8N5C7 304 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 OTUD6BQ8N6M0 293 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 PRELID2Q8N945 189 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 TTC29Q8NA56 475 aaPredicted RBP7.29□□□□□ -1.24
CUX1-219ENST00000606749 OR9A1PQ8NGU1 263 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 PRR7Q8TB68 274 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 SSC4DQ8WTU2 575 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 LPGAT1Q92604 370 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 FAM136AQ96C01 138 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 SPSB2Q99619 263 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 BARD1Q99728 777 aaKnown RBP7.29□□□□□ -1.24
CUX1-219ENST00000606749 MIPEPQ99797 713 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 SOX17Q9H6I2 414 aaPredicted RBP7.29□□□□□ -1.24
CUX1-219ENST00000606749 SLC6A20Q9NP91 592 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 ASF1BQ9NVP2 202 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 CUEDC1Q9NWM3 386 aaPredicted RBP7.29□□□□□ -1.24
CUX1-219ENST00000606749 STOX2Q9P2F5 926 aaPredicted RBP7.29□□□□□ -1.24
CUX1-219ENST00000606749 CTSFQ9UBX1 484 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 ZC3H7BQ9UGR2 993 aaKnown RBP7.29□□□□□ -1.24
CUX1-219ENST00000606749 CDC23Q9UJX2 597 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 FBXL4Q9UKA2 621 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 CRYL1Q9Y2S2 319 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 HS3ST3B1Q9Y662 390 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 MAU2Q9Y6X3 613 aa7.29□□□□□ -1.24
CUX1-219ENST00000606749 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.28□□□□□ -1.24
CUX1-219ENST00000606749 A0A0J9YVX5 310 aa7.28□□□□□ -1.24
CUX1-219ENST00000606749 OR2A25A4D2G3 310 aa7.28□□□□□ -1.24
CUX1-219ENST00000606749 ARHGEF33A8MVX0 844 aa7.28□□□□□ -1.24
CUX1-219ENST00000606749 PFDN6O15212 129 aa7.28□□□□□ -1.24
CUX1-219ENST00000606749 NRP2O60462 931 aa7.28□□□□□ -1.24
CUX1-219ENST00000606749 NIPSNAP2O75323 286 aa7.28□□□□□ -1.24
CUX1-219ENST00000606749 ALOX12BO75342 701 aa7.28□□□□□ -1.24
CUX1-219ENST00000606749 CCDC175P0C221 793 aa7.28□□□□□ -1.24
CUX1-219ENST00000606749 RNF224P0DH78 156 aa7.28□□□□□ -1.24
CUX1-219ENST00000606749 ERGP11308 486 aa7.28□□□□□ -1.24
CUX1-219ENST00000606749 OGNP20774 298 aaKnown RBP7.28□□□□□ -1.24
CUX1-219ENST00000606749 ITGA3P26006 1051 aa7.28□□□□□ -1.24
CUX1-219ENST00000606749 ATP5DP30049 168 aa7.28□□□□□ -1.24
CUX1-219ENST00000606749 CMPK1P30085 196 aa7.28□□□□□ -1.24
CUX1-219ENST00000606749 MAGEA6P43360 314 aa7.28□□□□□ -1.24
CUX1-219ENST00000606749 GLRBP48167 497 aa7.28□□□□□ -1.24
CUX1-219ENST00000606749 TERF1P54274 439 aa7.28□□□□□ -1.24
CUX1-219ENST00000606749 SARNPP82979 210 aaKnown RBP7.28□□□□□ -1.24
CUX1-219ENST00000606749 GPS1Q13098 491 aa7.28□□□□□ -1.24
CUX1-219ENST00000606749 KCNJ11Q14654 390 aa7.28□□□□□ -1.24
CUX1-219ENST00000606749 NR6A1Q15406 480 aa7.28□□□□□ -1.24
CUX1-219ENST00000606749 KLHL38Q2WGJ6 581 aa7.28□□□□□ -1.24
CUX1-219ENST00000606749 ANKRD20A4Q4UJ75 823 aa7.28□□□□□ -1.24
CUX1-219ENST00000606749 ACSBG2Q5FVE4 666 aa7.28□□□□□ -1.24
CUX1-219ENST00000606749 RNF187Q5TA31 235 aaPredicted RBP7.28□□□□□ -1.24
CUX1-219ENST00000606749 ARMC3Q5W041 872 aa7.28□□□□□ -1.24
CUX1-219ENST00000606749 HIST2H2BCQ6DN03 193 aa7.28□□□□□ -1.24
CUX1-219ENST00000606749 KIAA0930Q6ICG6 404 aaPredicted RBP7.28□□□□□ -1.24
CUX1-219ENST00000606749 NEPROQ6NW34 567 aa7.28□□□□□ -1.24
CUX1-219ENST00000606749 IGFL2Q6UWQ7 119 aa7.28□□□□□ -1.24
CUX1-219ENST00000606749 SHISA6Q6ZSJ9 500 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms