RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 DSC3Q14574 896 aa17.88■□□□□ 0.45
UPF1-210ENST00000600689 MAD2L1BPQ15013 274 aaPredicted RBP17.88■□□□□ 0.45
UPF1-210ENST00000600689 TIGD6Q17RP2 521 aa17.88■□□□□ 0.45
UPF1-210ENST00000600689 RUNDC3AQ59EK9 446 aa17.88■□□□□ 0.45
UPF1-210ENST00000600689 OR2T5Q6IEZ7 315 aa17.88■□□□□ 0.45
UPF1-210ENST00000600689 AFTPHQ6ULP2 937 aa17.88■□□□□ 0.45
UPF1-210ENST00000600689 GALNT7Q86SF2 657 aa17.88■□□□□ 0.45
UPF1-210ENST00000600689 ATAD1Q8NBU5 361 aa17.88■□□□□ 0.45
UPF1-210ENST00000600689 OR2T29Q8NH02 315 aa17.88■□□□□ 0.45
UPF1-210ENST00000600689 PRRG3Q9BZD7 231 aa17.88■□□□□ 0.45
UPF1-210ENST00000600689 RUBCNLQ9H714 662 aa17.88■□□□□ 0.45
UPF1-210ENST00000600689 C2orf81A6NN90 581 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 CPSF4O95639 269 aaKnown RBP17.87■□□□□ 0.45
UPF1-210ENST00000600689 TNFRSF1BP20333 461 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 PBX3P40426 434 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 TUSC3Q13454 348 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 KIAA0040Q15053 153 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 TYSND1Q2T9J0 566 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 FAM171A1Q5VUB5 890 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 NXNL2Q5VZ03 156 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 TCAIMQ8N3R3 496 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 GPR150Q8NGU9 434 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 UTP15Q8TED0 518 aaKnown RBP17.87■□□□□ 0.45
UPF1-210ENST00000600689 BHMTQ93088 406 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 TTYH2Q9BSA4 534 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 CENPOQ9BU64 300 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 LRTM1Q9HBL6 345 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 OSGIN1Q9UJX0 560 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 LOC730098B7Z3J9 87 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 FFAR2O15552 330 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 TWF1Q12792 350 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 SERINC3Q13530 473 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 ARHGEF7Q14155 803 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 CYP27C1Q4G0S4 372 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 PTRHD1Q6GMV3 140 aaKnown RBP17.87■□□□□ 0.45
UPF1-210ENST00000600689 GPR149Q86SP6 731 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 SKA2Q8WVK7 121 aaPredicted RBP17.87■□□□□ 0.45
UPF1-210ENST00000600689 TXNDC15Q96J42 360 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 BOCQ9BWV1 1114 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 EBPLQ9BY08 206 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 ITPAQ9BY32 194 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 NUAK2Q9H093 628 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 CPNE5Q9HCH3 593 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 LATS2Q9NRM7 1088 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 PLSCR3Q9NRY6 295 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 ELOVL2Q9NXB9 296 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 M0QZQ0 153 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 CBX4O00257 560 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 CTDSP2O14595 271 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 TLL1O43897 1013 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 PRKAR2AP13861 404 aaKnown RBP17.87■□□□□ 0.45
UPF1-210ENST00000600689 POU2F1P14859 743 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 S100A3P33764 101 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 GRK3P35626 688 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 SF1Q15637 639 aaKnown RBP17.87■□□□□ 0.45
UPF1-210ENST00000600689 TAB1Q15750 504 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 OR4F3Q6IEY1 312 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 ZNF551Q7Z340 670 aaPredicted RBP17.87■□□□□ 0.45
UPF1-210ENST00000600689 OR6K2Q8NGY2 324 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 PPP3R2Q96LZ3 170 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 CDK5RAP1Q96SZ6 601 aaKnown RBP17.87■□□□□ 0.45
UPF1-210ENST00000600689 TTPALQ9BTX7 342 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 CINPQ9BW66 212 aaPredicted RBP17.87■□□□□ 0.45
UPF1-210ENST00000600689 POPDC3Q9HBV1 291 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 EXOSC4Q9NPD3 245 aaKnown RBP17.87■□□□□ 0.45
UPF1-210ENST00000600689 PRDM5Q9NQX1 630 aaPredicted RBP17.87■□□□□ 0.45
UPF1-210ENST00000600689 TMEM248Q9NWD8 314 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 GPR83Q9NYM4 423 aa17.87■□□□□ 0.45
UPF1-210ENST00000600689 RGS14O43566 566 aa17.86■□□□□ 0.45
UPF1-210ENST00000600689 GNPDA1P46926 289 aa17.86■□□□□ 0.45
UPF1-210ENST00000600689 KCNQ1P51787 676 aa17.86■□□□□ 0.45
UPF1-210ENST00000600689 ACVR1Q04771 509 aa17.86■□□□□ 0.45
UPF1-210ENST00000600689 ZNF621Q6ZSS3 439 aa17.86■□□□□ 0.45
UPF1-210ENST00000600689 CHPFQ8IZ52 775 aa17.86■□□□□ 0.45
UPF1-210ENST00000600689 THEM5Q8N1Q8 247 aa17.86■□□□□ 0.45
UPF1-210ENST00000600689 NEDD4LQ96PU5 975 aa17.86■□□□□ 0.45
UPF1-210ENST00000600689 TRIM39Q9HCM9 518 aa17.86■□□□□ 0.45
UPF1-210ENST00000600689 NLE1Q9NVX2 485 aaPredicted RBP17.86■□□□□ 0.45
UPF1-210ENST00000600689 EHD3Q9NZN3 535 aa17.86■□□□□ 0.45
UPF1-210ENST00000600689 PRG3Q9Y2Y8 225 aaPredicted RBP17.86■□□□□ 0.45
UPF1-210ENST00000600689 OR2A25A4D2G3 310 aa17.86■□□□□ 0.45
UPF1-210ENST00000600689 STSP08842 583 aa17.86■□□□□ 0.45
UPF1-210ENST00000600689 HOXA9P31269 272 aa17.86■□□□□ 0.45
UPF1-210ENST00000600689 ZNF140P52738 457 aaPredicted RBP17.86■□□□□ 0.45
UPF1-210ENST00000600689 PLEKHG6Q3KR16 790 aa17.86■□□□□ 0.45
UPF1-210ENST00000600689 LRRC49Q8IUZ0 686 aa17.86■□□□□ 0.45
UPF1-210ENST00000600689 AADATQ8N5Z0 425 aa17.86■□□□□ 0.45
UPF1-210ENST00000600689 SLC38A4Q969I6 547 aa17.86■□□□□ 0.45
UPF1-210ENST00000600689 CEP19Q96LK0 163 aa17.86■□□□□ 0.45
UPF1-210ENST00000600689 CCDC115Q96NT0 180 aa17.86■□□□□ 0.45
UPF1-210ENST00000600689 CIPCQ9C0C6 399 aa17.86■□□□□ 0.45
UPF1-210ENST00000600689 N6AMT1Q9Y5N5 214 aa17.86■□□□□ 0.45
UPF1-210ENST00000600689 METTL15A6NJ78 407 aa17.85■□□□□ 0.45
UPF1-210ENST00000600689 DSCR3O14972 297 aa17.85■□□□□ 0.45
UPF1-210ENST00000600689 WBP4O75554 376 aaKnown RBP17.85■□□□□ 0.45
UPF1-210ENST00000600689 OTCP00480 354 aa17.85■□□□□ 0.45
UPF1-210ENST00000600689 NTRK1P04629 796 aa17.85■□□□□ 0.45
UPF1-210ENST00000600689 BCKDHAP12694 445 aa17.85■□□□□ 0.45
UPF1-210ENST00000600689 HOXB8P17481 243 aaPredicted RBP17.85■□□□□ 0.45
UPF1-210ENST00000600689 CTSKP43235 329 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms