RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 CDC42EP4Q9H3Q1 356 aaKnown RBP14.47□□□□□ -0.09
UPF1-202ENST00000594243 FAM60AQ9NP50 221 aa14.47□□□□□ -0.09
UPF1-202ENST00000594243 NFU1Q9UMS0 254 aa14.47□□□□□ -0.09
UPF1-202ENST00000594243 PCDHB3Q9Y5E6 796 aa14.47□□□□□ -0.09
UPF1-202ENST00000594243 A0A1W2PPV9 198 aa14.46□□□□□ -0.09
UPF1-202ENST00000594243 E7EQ34 232 aa14.46□□□□□ -0.09
UPF1-202ENST00000594243 CCNDBP1O95273 360 aa14.46□□□□□ -0.09
UPF1-202ENST00000594243 IMPA1P29218 277 aa14.46□□□□□ -0.09
UPF1-202ENST00000594243 PGGT1BP53609 377 aa14.46□□□□□ -0.09
UPF1-202ENST00000594243 ITGA1P56199 1179 aa14.46□□□□□ -0.09
UPF1-202ENST00000594243 AP1S2P56377 157 aa14.46□□□□□ -0.09
UPF1-202ENST00000594243 TSTA3Q13630 321 aaPredicted RBP14.46□□□□□ -0.09
UPF1-202ENST00000594243 ZIC1Q15915 447 aa14.46□□□□□ -0.09
UPF1-202ENST00000594243 COL28A1Q2UY09 1125 aa14.46□□□□□ -0.09
UPF1-202ENST00000594243 KIAA1614Q5VZ46 1190 aa14.46□□□□□ -0.09
UPF1-202ENST00000594243 TIPARPQ7Z3E1 657 aaKnown RBP14.46□□□□□ -0.09
UPF1-202ENST00000594243 FAM20CQ8IXL6 584 aa14.46□□□□□ -0.09
UPF1-202ENST00000594243 DNAJC22Q8N4W6 341 aa14.46□□□□□ -0.09
UPF1-202ENST00000594243 ZSCAN1Q8NBB4 408 aa14.46□□□□□ -0.09
UPF1-202ENST00000594243 PPFIBP2Q8ND30 876 aa14.46□□□□□ -0.09
UPF1-202ENST00000594243 OR1L3Q8NH93 324 aa14.46□□□□□ -0.09
UPF1-202ENST00000594243 MIPEPQ99797 713 aa14.46□□□□□ -0.09
UPF1-202ENST00000594243 EFHD1Q9BUP0 239 aa14.46□□□□□ -0.09
UPF1-202ENST00000594243 FUT8Q9BYC5 575 aa14.46□□□□□ -0.09
UPF1-202ENST00000594243 SLC7A5P2Q9GIP4 190 aa14.46□□□□□ -0.09
UPF1-202ENST00000594243 UTP6Q9NYH9 597 aaKnown RBP14.46□□□□□ -0.09
UPF1-202ENST00000594243 PADI1Q9ULC6 663 aa14.46□□□□□ -0.09
UPF1-202ENST00000594243 NOVA2Q9UNW9 492 aaKnown RBP14.46□□□□□ -0.09
UPF1-202ENST00000594243 PLCL2Q9UPR0 1127 aa14.46□□□□□ -0.09
UPF1-202ENST00000594243 KLK4Q9Y5K2 254 aa14.46□□□□□ -0.09
UPF1-202ENST00000594243 ADAMTS20P59510 1910 aa14.46□□□□□ -0.09
UPF1-202ENST00000594243 ESPNB1AK53 854 aa14.45□□□□□ -0.1
UPF1-202ENST00000594243 CPNE3O75131 537 aaKnown RBP14.45□□□□□ -0.1
UPF1-202ENST00000594243 FAM155BO75949 473 aa14.45□□□□□ -0.1
UPF1-202ENST00000594243 TIAF1O95411 115 aa14.45□□□□□ -0.1
UPF1-202ENST00000594243 ACSL3O95573 720 aa14.45□□□□□ -0.1
UPF1-202ENST00000594243 NTRK1P04629 796 aa14.45□□□□□ -0.1
UPF1-202ENST00000594243 KLK3P07288 261 aaPredicted RBP14.45□□□□□ -0.1
UPF1-202ENST00000594243 HBQ1P09105 142 aa14.45□□□□□ -0.1
UPF1-202ENST00000594243 CCND1P24385 295 aa14.45□□□□□ -0.1
UPF1-202ENST00000594243 PSMB5P28074 263 aa14.45□□□□□ -0.1
UPF1-202ENST00000594243 GRIA3P42263 894 aa14.45□□□□□ -0.1
UPF1-202ENST00000594243 GABRA4P48169 554 aa14.45□□□□□ -0.1
UPF1-202ENST00000594243 CXADRP78310 365 aa14.45□□□□□ -0.1
UPF1-202ENST00000594243 ABATP80404 500 aa14.45□□□□□ -0.1
UPF1-202ENST00000594243 PRDX1Q06830 199 aaKnown RBP14.45□□□□□ -0.1
UPF1-202ENST00000594243 VAC14Q08AM6 782 aa14.45□□□□□ -0.1
UPF1-202ENST00000594243 ZNF460Q14592 562 aa14.45□□□□□ -0.1
UPF1-202ENST00000594243 ITPR1Q14643 2758 aa14.45□□□□□ -0.1
UPF1-202ENST00000594243 THEMIS2Q5TEJ8 643 aa14.45□□□□□ -0.1
UPF1-202ENST00000594243 FCRL6Q6DN72 434 aa14.45□□□□□ -0.1
UPF1-202ENST00000594243 LRRC56Q8IYG6 542 aaPredicted RBP14.45□□□□□ -0.1
UPF1-202ENST00000594243 EIF1ADQ8N9N8 165 aaKnown RBP14.45□□□□□ -0.1
UPF1-202ENST00000594243 GALNT6Q8NCL4 622 aa14.45□□□□□ -0.1
UPF1-202ENST00000594243 ATL1Q8WXF7 558 aa14.45□□□□□ -0.1
UPF1-202ENST00000594243 KIAA1143Q96AT1 154 aaPredicted RBP14.45□□□□□ -0.1
UPF1-202ENST00000594243 ACAT2Q9BWD1 397 aa14.45□□□□□ -0.1
UPF1-202ENST00000594243 PCBD2Q9H0N5 130 aa14.45□□□□□ -0.1
UPF1-202ENST00000594243 ACSS3Q9H6R3 686 aa14.45□□□□□ -0.1
UPF1-202ENST00000594243 CAB39LQ9H9S4 337 aa14.45□□□□□ -0.1
UPF1-202ENST00000594243 MRPS30Q9NP92 439 aaKnown RBP14.45□□□□□ -0.1
UPF1-202ENST00000594243 CCDC177Q9NQR7 707 aaPredicted RBP14.45□□□□□ -0.1
UPF1-202ENST00000594243 ARL15Q9NXU5 204 aa14.45□□□□□ -0.1
UPF1-202ENST00000594243 STOX2Q9P2F5 926 aaPredicted RBP14.45□□□□□ -0.1
UPF1-202ENST00000594243 ANKMY1Q9P2S6 941 aa14.45□□□□□ -0.1
UPF1-202ENST00000594243 KLHL20Q9Y2M5 609 aa14.45□□□□□ -0.1
UPF1-202ENST00000594243 AP1M2Q9Y6Q5 423 aa14.45□□□□□ -0.1
UPF1-202ENST00000594243 LAMA5O15230 3695 aa14.45□□□□□ -0.1
UPF1-202ENST00000594243 NBEAQ8NFP9 2946 aa14.44□□□□□ -0.1
UPF1-202ENST00000594243 TEX51A0A1B0GUA7 166 aa14.44□□□□□ -0.1
UPF1-202ENST00000594243 K7ENP7 123 aa14.44□□□□□ -0.1
UPF1-202ENST00000594243 SRPX2O60687 465 aaPredicted RBP14.44□□□□□ -0.1
UPF1-202ENST00000594243 OR2B3O76000 313 aa14.44□□□□□ -0.1
UPF1-202ENST00000594243 CRABP2P29373 138 aa14.44□□□□□ -0.1
UPF1-202ENST00000594243 RAB10P61026 200 aa14.44□□□□□ -0.1
UPF1-202ENST00000594243 EFTUD2Q15029 972 aaKnown RBP eCLIP14.44□□□□□ -0.12e-8■■■■■ 57.6
UPF1-202ENST00000594243 PHKG1Q16816 387 aa14.44□□□□□ -0.1
UPF1-202ENST00000594243 TEX35Q5T0J7 233 aa14.44□□□□□ -0.1
UPF1-202ENST00000594243 ICE2Q659A1 982 aa14.44□□□□□ -0.1
UPF1-202ENST00000594243 TLDC1Q6P9B6 456 aa14.44□□□□□ -0.1
UPF1-202ENST00000594243 INO80CQ6PI98 192 aaPredicted RBP14.44□□□□□ -0.1
UPF1-202ENST00000594243 AGTRAPQ6RW13 159 aa14.44□□□□□ -0.1
UPF1-202ENST00000594243 RAPH1Q70E73 1250 aa14.44□□□□□ -0.1
UPF1-202ENST00000594243 MCATQ8IVS2 390 aaKnown RBP14.44□□□□□ -0.1
UPF1-202ENST00000594243 ANKRD49Q8WVL7 239 aa14.44□□□□□ -0.1
UPF1-202ENST00000594243 CLIP3Q96DZ5 547 aa14.44□□□□□ -0.1
UPF1-202ENST00000594243 MRRFQ96E11 262 aaKnown RBP14.44□□□□□ -0.1
UPF1-202ENST00000594243 LRFN5Q96NI6 719 aa14.44□□□□□ -0.1
UPF1-202ENST00000594243 DPH7Q9BTV6 452 aa14.44□□□□□ -0.1
UPF1-202ENST00000594243 DERL2Q9GZP9 239 aa14.44□□□□□ -0.1
UPF1-202ENST00000594243 PRORYQ9H606 182 aa14.44□□□□□ -0.1
UPF1-202ENST00000594243 CPNE5Q9HCH3 593 aa14.44□□□□□ -0.1
UPF1-202ENST00000594243 LHX9Q9NQ69 397 aa14.44□□□□□ -0.1
UPF1-202ENST00000594243 IRAK4Q9NWZ3 460 aa14.44□□□□□ -0.1
UPF1-202ENST00000594243 EURLQ9NYK6 297 aa14.44□□□□□ -0.1
UPF1-202ENST00000594243 CTNNAL1Q9UBT7 734 aa14.44□□□□□ -0.1
UPF1-202ENST00000594243 TAC3Q9UHF0 121 aa14.44□□□□□ -0.1
UPF1-202ENST00000594243 IKBKGQ9Y6K9 419 aa14.44□□□□□ -0.1
UPF1-202ENST00000594243 CACNA1GO43497 2377 aa14.43□□□□□ -0.1
UPF1-202ENST00000594243 A0A087WUV0 522 aaPredicted RBP14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms