RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 TREX1Q9NSU2 369 aa22.9■■□□□ 1.26
LSM4-202ENST00000593564 CTSFQ9UBX1 484 aa22.9■■□□□ 1.26
LSM4-202ENST00000593564 NOVA2Q9UNW9 492 aaKnown RBP22.9■■□□□ 1.26
LSM4-202ENST00000593564 NUP210LQ5VU65 1888 aa22.9■■□□□ 1.26
LSM4-202ENST00000593564 VSTM2BA6NLU5 285 aa22.89■■□□□ 1.25
LSM4-202ENST00000593564 KPNA5O15131 536 aa22.89■■□□□ 1.25
LSM4-202ENST00000593564 SRPX2O60687 465 aaPredicted RBP22.89■■□□□ 1.25
LSM4-202ENST00000593564 CTSVO60911 334 aa22.89■■□□□ 1.25
LSM4-202ENST00000593564 ALOX12BO75342 701 aa22.89■■□□□ 1.25
LSM4-202ENST00000593564 C1orf105O95561 183 aa22.89■■□□□ 1.25
LSM4-202ENST00000593564 CLDN1O95832 211 aa22.89■■□□□ 1.25
LSM4-202ENST00000593564 SNX1Q13596 522 aa22.89■■□□□ 1.25
LSM4-202ENST00000593564 ELOAQ14241 798 aaKnown RBP22.89■■□□□ 1.25
LSM4-202ENST00000593564 AGAP7PQ5VUJ5 663 aa22.89■■□□□ 1.25
LSM4-202ENST00000593564 IRAK1BP1Q5VVH5 260 aa22.89■■□□□ 1.25
LSM4-202ENST00000593564 RAB42Q8N4Z0 105 aa22.89■■□□□ 1.25
LSM4-202ENST00000593564 COG1Q8WTW3 980 aa22.89■■□□□ 1.25
LSM4-202ENST00000593564 AGAP4Q96P64 663 aa22.89■■□□□ 1.25
LSM4-202ENST00000593564 SOX17Q9H6I2 414 aaPredicted RBP22.89■■□□□ 1.25
LSM4-202ENST00000593564 EIF2B3Q9NR50 452 aaKnown RBP22.89■■□□□ 1.25
LSM4-202ENST00000593564 AGPAT4Q9NRZ5 378 aa22.89■■□□□ 1.25
LSM4-202ENST00000593564 SEMA3GQ9NS98 782 aa22.89■■□□□ 1.25
LSM4-202ENST00000593564 TTC7AQ9ULT0 858 aaPredicted RBP22.89■■□□□ 1.25
LSM4-202ENST00000593564 CSAG2Q9Y5P2 127 aa22.89■■□□□ 1.25
LSM4-202ENST00000593564 FAM169AQ9Y6X4 670 aa22.89■■□□□ 1.25
LSM4-202ENST00000593564 CNTRLQ7Z7A1 2325 aa22.89■■□□□ 1.25
LSM4-202ENST00000593564 RPS3P23396 243 aaKnown RBP eCLIP22.88■■□□□ 1.25
LSM4-202ENST00000593564 BDKRB1P46663 353 aa22.88■■□□□ 1.25
LSM4-202ENST00000593564 OR1D4P47884 311 aa22.88■■□□□ 1.25
LSM4-202ENST00000593564 SESN2P58004 480 aaPredicted RBP22.88■■□□□ 1.25
LSM4-202ENST00000593564 RBBP7Q16576 425 aa22.88■■□□□ 1.25
LSM4-202ENST00000593564 HIF1AQ16665 826 aa22.88■■□□□ 1.25
LSM4-202ENST00000593564 TUBB8Q3ZCM7 444 aa22.88■■□□□ 1.25
LSM4-202ENST00000593564 SHISA6Q6ZSJ9 500 aa22.88■■□□□ 1.25
LSM4-202ENST00000593564 OTOAQ7RTW8 1153 aa22.88■■□□□ 1.25
LSM4-202ENST00000593564 METTL27Q8N6F8 245 aaPredicted RBP22.88■■□□□ 1.25
LSM4-202ENST00000593564 VPS50Q96JG6 964 aa22.88■■□□□ 1.25
LSM4-202ENST00000593564 LHPPQ9H008 270 aa22.88■■□□□ 1.25
LSM4-202ENST00000593564 NFS1Q9Y697 457 aa22.88■■□□□ 1.25
LSM4-202ENST00000593564 ZSCAN5DPP0CG00 497 aa22.87■■□□□ 1.25
LSM4-202ENST00000593564 PSMB5P28074 263 aa22.87■■□□□ 1.25
LSM4-202ENST00000593564 RPL22P35268 128 aaKnown RBP22.87■■□□□ 1.25
LSM4-202ENST00000593564 CCNFP41002 786 aa22.87■■□□□ 1.25
LSM4-202ENST00000593564 VSX2P58304 361 aaPredicted RBP22.87■■□□□ 1.25
LSM4-202ENST00000593564 CCSMST1Q4G0I0 132 aa22.87■■□□□ 1.25
LSM4-202ENST00000593564 WASHC2DQ5SRD0 308 aa22.87■■□□□ 1.25
LSM4-202ENST00000593564 ST6GALNAC3Q8NDV1 305 aa22.87■■□□□ 1.25
LSM4-202ENST00000593564 OR2L3Q8NG85 312 aa22.87■■□□□ 1.25
LSM4-202ENST00000593564 OR11G2Q8NGC1 345 aa22.87■■□□□ 1.25
LSM4-202ENST00000593564 SKA2Q8WVK7 121 aaPredicted RBP22.87■■□□□ 1.25
LSM4-202ENST00000593564 MIPEPQ99797 713 aa22.87■■□□□ 1.25
LSM4-202ENST00000593564 IL22Q9GZX6 179 aa22.87■■□□□ 1.25
LSM4-202ENST00000593564 DOCK10Q96BY6 2186 aa22.87■■□□□ 1.25
LSM4-202ENST00000593564 HYKKA2RU49 373 aa22.86■■□□□ 1.25
LSM4-202ENST00000593564 NDUFS3O75489 264 aa22.86■■□□□ 1.25
LSM4-202ENST00000593564 TSFMP43897 325 aaKnown RBP22.86■■□□□ 1.25
LSM4-202ENST00000593564 CRADDP78560 199 aa22.86■■□□□ 1.25
LSM4-202ENST00000593564 FRMPD2BQ6IN97 320 aa22.86■■□□□ 1.25
LSM4-202ENST00000593564 DTWD1Q8N5C7 304 aa22.86■■□□□ 1.25
LSM4-202ENST00000593564 OR2A1Q8NGT9 310 aa22.86■■□□□ 1.25
LSM4-202ENST00000593564 MAGEC3Q8TD91 643 aa22.86■■□□□ 1.25
LSM4-202ENST00000593564 FOPNLQ96NB1 174 aa22.86■■□□□ 1.25
LSM4-202ENST00000593564 SPATA7Q9P0W8 599 aa22.86■■□□□ 1.25
LSM4-202ENST00000593564 RUVBL2Q9Y230 463 aaKnown RBP22.86■■□□□ 1.25
LSM4-202ENST00000593564 MAU2Q9Y6X3 613 aa22.86■■□□□ 1.25
LSM4-202ENST00000593564 KRT87PA6NCN2 255 aa22.85■■□□□ 1.25
LSM4-202ENST00000593564 AP3B1O00203 1094 aa22.85■■□□□ 1.25
LSM4-202ENST00000593564 MED26O95402 600 aa22.85■■□□□ 1.25
LSM4-202ENST00000593564 COL8A1P27658 744 aa22.85■■□□□ 1.25
LSM4-202ENST00000593564 EIF3BP55884 814 aaKnown RBP22.85■■□□□ 1.25
LSM4-202ENST00000593564 SIX1Q15475 284 aaPredicted RBP22.85■■□□□ 1.25
LSM4-202ENST00000593564 CCNG2Q16589 344 aa22.85■■□□□ 1.25
LSM4-202ENST00000593564 B3GNTL1Q67FW5 361 aaPredicted RBP22.85■■□□□ 1.25
LSM4-202ENST00000593564 ZNF787Q6DD87 383 aa22.85■■□□□ 1.25
LSM4-202ENST00000593564 PRMT9Q6P2P2 845 aa22.85■■□□□ 1.25
LSM4-202ENST00000593564 C4orf22Q6V702 233 aa22.85■■□□□ 1.25
LSM4-202ENST00000593564 RNF44Q7L0R7 432 aa22.85■■□□□ 1.25
LSM4-202ENST00000593564 PARP9Q8IXQ6 854 aa22.85■■□□□ 1.25
LSM4-202ENST00000593564 DNAJB14Q8TBM8 379 aa22.85■■□□□ 1.25
LSM4-202ENST00000593564 CRB3Q9BUF7 120 aa22.85■■□□□ 1.25
LSM4-202ENST00000593564 TSGA10Q9BZW7 698 aa22.85■■□□□ 1.25
LSM4-202ENST00000593564 EPS8L2Q9H6S3 715 aa22.85■■□□□ 1.25
LSM4-202ENST00000593564 ZNF304Q9HCX3 659 aa22.85■■□□□ 1.25
LSM4-202ENST00000593564 BFARQ9NZS9 450 aa22.85■■□□□ 1.25
LSM4-202ENST00000593564 CELSR2Q9HCU4 2923 aa22.84■■□□□ 1.25
LSM4-202ENST00000593564 A0A0J9YVX5 310 aa22.84■■□□□ 1.25
LSM4-202ENST00000593564 A0A1W2PPV9 198 aa22.84■■□□□ 1.25
LSM4-202ENST00000593564 NMBRP28336 390 aa22.84■■□□□ 1.25
LSM4-202ENST00000593564 DCTP40126 519 aa22.84■■□□□ 1.25
LSM4-202ENST00000593564 NPY2RP49146 381 aa22.84■■□□□ 1.25
LSM4-202ENST00000593564 CARSP49589 748 aaKnown RBP22.84■■□□□ 1.25
LSM4-202ENST00000593564 OCA2Q04671 838 aa22.84■■□□□ 1.25
LSM4-202ENST00000593564 ZNF169Q14929 603 aaPredicted RBP22.84■■□□□ 1.25
LSM4-202ENST00000593564 NAA25Q14CX7 972 aa22.84■■□□□ 1.25
LSM4-202ENST00000593564 CTSL3PQ5NE16 218 aa22.84■■□□□ 1.25
LSM4-202ENST00000593564 DRICH1Q6PGQ1 229 aaPredicted RBP22.84■■□□□ 1.25
LSM4-202ENST00000593564 CNSTQ6PJW8 725 aa22.84■■□□□ 1.25
LSM4-202ENST00000593564 KCNMB4Q86W47 210 aa22.84■■□□□ 1.25
LSM4-202ENST00000593564 STT3BQ8TCJ2 826 aa22.84■■□□□ 1.25
LSM4-202ENST00000593564 BIRC8Q96P09 236 aa22.84■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms