RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 TTLL4Q14679 1199 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 NOMO1Q15155 1222 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 TEAD4Q15561 434 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 TAF2Q6P1X5 1199 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 NPNTQ6UXI9 565 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 DCP1BQ8IZD4 617 aaKnown RBP10.58□□□□□ -0.72
CLK3-226ENST00000569406 KLHL36Q8N4N3 616 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 TXNDC5Q8NBS9 432 aaKnown RBP10.58□□□□□ -0.72
CLK3-226ENST00000569406 METTL6Q8TCB7 284 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 GTF3AQ92664 365 aaKnown RBP10.58□□□□□ -0.72
CLK3-226ENST00000569406 UHRF1Q96T88 793 aaPredicted RBP10.58□□□□□ -0.72
CLK3-226ENST00000569406 SORT1Q99523 831 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 RPF1Q9H9Y2 349 aaKnown RBP10.58□□□□□ -0.72
CLK3-226ENST00000569406 GBA2Q9HCG7 927 aaPredicted RBP10.58□□□□□ -0.72
CLK3-226ENST00000569406 CCM2LQ9NUG4 571 aaPredicted RBP10.58□□□□□ -0.72
CLK3-226ENST00000569406 BFARQ9NZS9 450 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 ELF5Q9UKW6 265 aaPredicted RBP10.58□□□□□ -0.72
CLK3-226ENST00000569406 MRPS14O60783 128 aaKnown RBP10.58□□□□□ -0.72
CLK3-226ENST00000569406 IGFBP6P24592 240 aaPredicted RBP10.58□□□□□ -0.72
CLK3-226ENST00000569406 OXTRP30559 389 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 RFX2P48378 723 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 PPP3CCP48454 512 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 SERPINB9P50453 376 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 DEFA6Q01524 100 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 GPR17Q13304 367 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 ZNF484Q5JVG2 852 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 RBM48Q5RL73 367 aaKnown RBP10.58□□□□□ -0.72
CLK3-226ENST00000569406 GK5Q6ZS86 529 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 FAM92BQ6ZTR7 304 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 CCDC149Q6ZUS6 474 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 CHPFQ8IZ52 775 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 CARFQ8N187 725 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 UBA3Q8TBC4 463 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 MAP3K3Q99759 626 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 CRB3Q9BUF7 120 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 FAM49AQ9H0Q0 323 aaPredicted RBP10.58□□□□□ -0.72
CLK3-226ENST00000569406 QRSL1Q9H0R6 528 aaKnown RBP10.58□□□□□ -0.72
CLK3-226ENST00000569406 SMOC2Q9H3U7 446 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 RNF19AQ9NV58 838 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 GPATCH2LQ9NWQ4 482 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 GLS2Q9UI32 602 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 MKLN1Q9UL63 735 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 AUP1Q9Y679 476 aa10.58□□□□□ -0.72
CLK3-226ENST00000569406 LOC100506127A0A0U1RQW1 187 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 MFSD2BA6NFX1 497 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 XPNPEP2O43895 674 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 RFPL1O75677 317 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 IPO13O94829 963 aaKnown RBP10.57□□□□□ -0.72
CLK3-226ENST00000569406 RAB3BP20337 219 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 S100PP25815 95 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 CD68P34810 354 aaPredicted RBP10.57□□□□□ -0.72
CLK3-226ENST00000569406 SESN2P58004 480 aaPredicted RBP10.57□□□□□ -0.72
CLK3-226ENST00000569406 INPP5AQ14642 412 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 NCF4Q15080 339 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 PDZK1Q5T2W1 519 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 VASNQ6EMK4 673 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 C16orf54Q6UWD8 224 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 LCLAT1Q6UWP7 414 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 FAM183BPQ6ZVS7 135 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 RRM2BQ7LG56 351 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 PPIL6Q8IXY8 311 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 PQLC3Q8N755 202 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 WDR36Q8NI36 951 aaKnown RBP10.57□□□□□ -0.72
CLK3-226ENST00000569406 CEP76Q8TAP6 659 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 LURAP1Q96LR2 239 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 ZSWIM3Q96MP5 696 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 OR2A14Q96R47 310 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 PTPN18Q99952 460 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 ZYG11BQ9C0D3 744 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 BTBD1Q9H0C5 482 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 AP5M1Q9H0R1 490 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 RAPGEFL1Q9UHV5 662 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 CDY1Q9Y6F8 540 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 DNMT3AQ9Y6K1 912 aaPredicted RBP10.57□□□□□ -0.72
CLK3-226ENST00000569406 SLC22A23A1A5C7 686 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 METTL15A6NJ78 407 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 CXorf49A8MYA2 514 aaPredicted RBP10.57□□□□□ -0.72
CLK3-226ENST00000569406 PCDH17O14917 1159 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 GPR37O15354 613 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 SOAT2O75908 522 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 CXCL14O95715 111 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 ALDH1A1P00352 501 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 TNNC2P02585 160 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 HMGCRP04035 888 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 CBR1P16152 277 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 ATP6V1B2P21281 511 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 ARRB2P32121 409 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 RPS5P46782 204 aaKnown RBP10.57□□□□□ -0.72
CLK3-226ENST00000569406 HNMTP50135 292 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 ZNF143P52747 638 aaPredicted RBP10.57□□□□□ -0.72
CLK3-226ENST00000569406 GABREP78334 506 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 DPYSL3Q14195 570 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 SYT16Q17RD7 645 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 HFEQ30201 348 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 ZNF667Q5HYK9 610 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 C6orf141Q5SZD1 244 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 FAM102AQ5T9C2 384 aaPredicted RBP10.57□□□□□ -0.72
CLK3-226ENST00000569406 MANEALQ5VSG8 457 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 KDELC1Q6UW63 502 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 LIMS2Q7Z4I7 341 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 103.1 ms