RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 SLC22A14Q9Y267 594 aa16.03■□□□□ 0.16
VPS4A-202ENST00000562754 TNPO3Q9Y5L0 923 aaKnown RBP16.03■□□□□ 0.16
VPS4A-202ENST00000562754 K7EPI3 171 aa16.02■□□□□ 0.16
VPS4A-202ENST00000562754 GFRA3O60609 400 aa16.02■□□□□ 0.16
VPS4A-202ENST00000562754 CKMT2P17540 419 aa16.02■□□□□ 0.16
VPS4A-202ENST00000562754 EPORP19235 508 aa16.02■□□□□ 0.16
VPS4A-202ENST00000562754 ARRB2P32121 409 aa16.02■□□□□ 0.16
VPS4A-202ENST00000562754 CSF2RBP32927 897 aa16.02■□□□□ 0.16
VPS4A-202ENST00000562754 CCR10P46092 362 aa16.02■□□□□ 0.16
VPS4A-202ENST00000562754 DUSP3P51452 185 aaPredicted RBP16.02■□□□□ 0.16
VPS4A-202ENST00000562754 LIMK1P53667 647 aa16.02■□□□□ 0.16
VPS4A-202ENST00000562754 YBX1P67809 324 aaKnown RBP16.02■□□□□ 0.16
VPS4A-202ENST00000562754 CHI3L2Q15782 390 aa16.02■□□□□ 0.16
VPS4A-202ENST00000562754 PRAMEF13Q5VWM6 474 aa16.02■□□□□ 0.16
VPS4A-202ENST00000562754 NKAIN2Q5VXU1 208 aa16.02■□□□□ 0.16
VPS4A-202ENST00000562754 GOLGA7Q7Z5G4 137 aa16.02■□□□□ 0.16
VPS4A-202ENST00000562754 OOSP2Q86WS3 158 aa16.02■□□□□ 0.16
VPS4A-202ENST00000562754 TEX9Q8N6V9 391 aa16.02■□□□□ 0.16
VPS4A-202ENST00000562754 CCNYL1Q8N7R7 359 aa16.02■□□□□ 0.16
VPS4A-202ENST00000562754 CCDC3Q9BQI4 270 aa16.02■□□□□ 0.16
VPS4A-202ENST00000562754 ACAT2Q9BWD1 397 aa16.02■□□□□ 0.16
VPS4A-202ENST00000562754 SLC32A1Q9H598 525 aa16.02■□□□□ 0.16
VPS4A-202ENST00000562754 ZBTB26Q9HCK0 441 aa16.02■□□□□ 0.16
VPS4A-202ENST00000562754 ACTR10Q9NZ32 417 aa16.02■□□□□ 0.16
VPS4A-202ENST00000562754 TAC3Q9UHF0 121 aa16.02■□□□□ 0.16
VPS4A-202ENST00000562754 UNC13CQ8NB66 2214 aa16.01■□□□□ 0.15
VPS4A-202ENST00000562754 PIPSLA2A3N6 862 aa16.01■□□□□ 0.15
VPS4A-202ENST00000562754 GSAPA4D1B5 854 aa16.01■□□□□ 0.15
VPS4A-202ENST00000562754 SUPT7LO94864 414 aa16.01■□□□□ 0.15
VPS4A-202ENST00000562754 UGT2B7P16662 529 aa16.01■□□□□ 0.15
VPS4A-202ENST00000562754 AMD1P17707 334 aa16.01■□□□□ 0.15
VPS4A-202ENST00000562754 CCND1P24385 295 aa16.01■□□□□ 0.15
VPS4A-202ENST00000562754 ACP1P24666 158 aa16.01■□□□□ 0.15
VPS4A-202ENST00000562754 CD1CP29017 333 aa16.01■□□□□ 0.15
VPS4A-202ENST00000562754 ACADVLP49748 655 aa16.01■□□□□ 0.15
VPS4A-202ENST00000562754 CDH13P55290 713 aa16.01■□□□□ 0.15
VPS4A-202ENST00000562754 CFHR1Q03591 330 aa16.01■□□□□ 0.15
VPS4A-202ENST00000562754 GTF2H2Q13888 395 aa16.01■□□□□ 0.15
VPS4A-202ENST00000562754 KIR2DS3Q14952 304 aa16.01■□□□□ 0.15
VPS4A-202ENST00000562754 GTF2H2CQ6P1K8 395 aa16.01■□□□□ 0.15
VPS4A-202ENST00000562754 METTL2BQ6P1Q9 378 aaKnown RBP16.01■□□□□ 0.15
VPS4A-202ENST00000562754 LCTLQ6UWM7 567 aa16.01■□□□□ 0.15
VPS4A-202ENST00000562754 FRMD7Q6ZUT3 714 aa16.01■□□□□ 0.15
VPS4A-202ENST00000562754 TRIM73Q86UV7 250 aa16.01■□□□□ 0.15
VPS4A-202ENST00000562754 FAM20CQ8IXL6 584 aa16.01■□□□□ 0.15
VPS4A-202ENST00000562754 SNX31Q8N9S9 440 aa16.01■□□□□ 0.15
VPS4A-202ENST00000562754 OR2A1Q8NGT9 310 aa16.01■□□□□ 0.15
VPS4A-202ENST00000562754 PPM1MQ96MI6 270 aa16.01■□□□□ 0.15
VPS4A-202ENST00000562754 OR2A14Q96R47 310 aa16.01■□□□□ 0.15
VPS4A-202ENST00000562754 EVA1BQ9NVM1 165 aa16.01■□□□□ 0.15
VPS4A-202ENST00000562754 HRASLS2Q9NWW9 162 aa16.01■□□□□ 0.15
VPS4A-202ENST00000562754 POMT2Q9UKY4 750 aa16.01■□□□□ 0.15
VPS4A-202ENST00000562754 COL27A1Q8IZC6 1860 aaPredicted RBP16.01■□□□□ 0.15
VPS4A-202ENST00000562754 HEATR5BQ9P2D3 2071 aa16■□□□□ 0.15
VPS4A-202ENST00000562754 A0A1W2PQM1 296 aa16■□□□□ 0.15
VPS4A-202ENST00000562754 ISM1B1AKI9 464 aa16■□□□□ 0.15
VPS4A-202ENST00000562754 PPP6CO00743 305 aa16■□□□□ 0.15
VPS4A-202ENST00000562754 DUX1O43812 170 aa16■□□□□ 0.15
VPS4A-202ENST00000562754 PRAMEF4O60810 478 aa16■□□□□ 0.15
VPS4A-202ENST00000562754 SERPINE1P05121 402 aa16■□□□□ 0.15
VPS4A-202ENST00000562754 NPPBP16860 134 aa16■□□□□ 0.15
VPS4A-202ENST00000562754 TSPAN8P19075 237 aa16■□□□□ 0.15
VPS4A-202ENST00000562754 LSSP48449 732 aa16■□□□□ 0.15
VPS4A-202ENST00000562754 GFERP55789 205 aa16■□□□□ 0.15
VPS4A-202ENST00000562754 CCL7P80098 99 aa16■□□□□ 0.15
VPS4A-202ENST00000562754 GPLD1P80108 840 aa16■□□□□ 0.15
VPS4A-202ENST00000562754 ASPHQ12797 758 aa16■□□□□ 0.15
VPS4A-202ENST00000562754 CDC16Q13042 620 aa16■□□□□ 0.15
VPS4A-202ENST00000562754 PDK4Q16654 411 aa16■□□□□ 0.15
VPS4A-202ENST00000562754 AMZ1Q400G9 498 aa16■□□□□ 0.15
VPS4A-202ENST00000562754 THEMIS2Q5TEJ8 643 aa16■□□□□ 0.15
VPS4A-202ENST00000562754 PRAMEF9Q5VWM5 478 aa16■□□□□ 0.15
VPS4A-202ENST00000562754 FAM219BQ5XKK7 198 aa16■□□□□ 0.15
VPS4A-202ENST00000562754 ICE2Q659A1 982 aa16■□□□□ 0.15
VPS4A-202ENST00000562754 KLHL35Q6PF15 583 aa16■□□□□ 0.15
VPS4A-202ENST00000562754 ATG14Q6ZNE5 492 aa16■□□□□ 0.15
VPS4A-202ENST00000562754 KIAA2013Q8IYS2 634 aa16■□□□□ 0.15
VPS4A-202ENST00000562754 CKAP2Q8WWK9 683 aa16■□□□□ 0.15
VPS4A-202ENST00000562754 MIPEPQ99797 713 aa16■□□□□ 0.15
VPS4A-202ENST00000562754 ABCG4Q9H172 646 aa16■□□□□ 0.15
VPS4A-202ENST00000562754 EPB41L1Q9H4G0 881 aa16■□□□□ 0.15
VPS4A-202ENST00000562754 SLC6A20Q9NP91 592 aa16■□□□□ 0.15
VPS4A-202ENST00000562754 CUEDC1Q9NWM3 386 aaPredicted RBP16■□□□□ 0.15
VPS4A-202ENST00000562754 PCDHB11Q9Y5F2 797 aa16■□□□□ 0.15
VPS4A-202ENST00000562754 ENTPD2Q9Y5L3 495 aa16■□□□□ 0.15
VPS4A-202ENST00000562754 A0A1B0GTL3 188 aa15.99■□□□□ 0.15
VPS4A-202ENST00000562754 C2orf74A8MZ97 194 aa15.99■□□□□ 0.15
VPS4A-202ENST00000562754 OR7A17O14581 309 aa15.99■□□□□ 0.15
VPS4A-202ENST00000562754 NPHS1O60500 1241 aa15.99■□□□□ 0.15
VPS4A-202ENST00000562754 H2AFYO75367 372 aaKnown RBP15.99■□□□□ 0.15
VPS4A-202ENST00000562754 RPLP0P05388 317 aaKnown RBP15.99■□□□□ 0.15
VPS4A-202ENST00000562754 GYS2P54840 703 aa15.99■□□□□ 0.15
VPS4A-202ENST00000562754 GUCY1A3Q02108 690 aa15.99■□□□□ 0.15
VPS4A-202ENST00000562754 CLCQ05315 142 aa15.99■□□□□ 0.15
VPS4A-202ENST00000562754 BST1Q10588 318 aa15.99■□□□□ 0.15
VPS4A-202ENST00000562754 TRAF3Q13114 568 aa15.99■□□□□ 0.15
VPS4A-202ENST00000562754 PRKAA1Q13131 559 aa15.99■□□□□ 0.15
VPS4A-202ENST00000562754 RCN2Q14257 317 aa15.99■□□□□ 0.15
VPS4A-202ENST00000562754 CFAP157Q5JU67 520 aa15.99■□□□□ 0.15
VPS4A-202ENST00000562754 ARMC6Q6NXE6 501 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms