RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 IQANK1A0A1B0GTG1 560 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 TRABD2BA6NFA1 517 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 EFCAB7A8K855 629 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 C2orf74A8MZ97 194 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 TK2O00142 265 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 RASSF9O75901 435 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 CAPNS1P04632 268 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 ANKRD34CP0C6C1 535 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 PYGBP11216 843 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 FOLR1P15328 257 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 H2AFXP16104 143 aaPredicted RBP9.43□□□□□ -0.9
CLK3-208ENST00000562626 NELFEP18615 380 aaKnown RBP9.43□□□□□ -0.9
CLK3-208ENST00000562626 CDH3P22223 829 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 CNTFP26441 200 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 MAP4P27816 1152 aaKnown RBP9.43□□□□□ -0.9
CLK3-208ENST00000562626 OAS2P29728 719 aaKnown RBP9.43□□□□□ -0.9
CLK3-208ENST00000562626 GDF5P43026 501 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 SLC6A12P48065 614 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 GABRA4P48169 554 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 AGTR2P50052 363 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 ATP6V0D1P61421 351 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 ILF2Q12905 390 aaKnown RBP9.43□□□□□ -0.9
CLK3-208ENST00000562626 PRKAA1Q13131 559 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 NAE1Q13564 534 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 KIR2DS3Q14952 304 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 GPR19Q15760 415 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 DEFB110Q30KQ9 67 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 TAF1BQ53T94 588 aaPredicted RBP9.43□□□□□ -0.9
CLK3-208ENST00000562626 ARMC6Q6NXE6 501 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 TTC23LQ6PF05 361 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 KLHL35Q6PF15 583 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 TAOK1Q7L7X3 1001 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 RAB11FIP2Q7L804 512 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 ADAMTSL2Q86TH1 951 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 TBC1D1Q86TI0 1168 aaPredicted RBP9.43□□□□□ -0.9
CLK3-208ENST00000562626 SYTL1Q8IYJ3 562 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 C4orf33Q8N1A6 199 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 OR2L3Q8NG85 312 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 OR56A3Q8NH54 315 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 MAGEC3Q8TD91 643 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 MCOLN3Q8TDD5 553 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 GATA6Q92908 595 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 ALKBH8Q96BT7 664 aaKnown RBP9.43□□□□□ -0.9
CLK3-208ENST00000562626 FBXL8Q96CD0 374 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 ZDHHC12Q96GR4 267 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 SLC41A2Q96JW4 573 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 CCDC138Q96M89 665 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 TMEM74Q96NL1 305 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 CTRCQ99895 268 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 SGPP1Q9BX95 441 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 SPNS1Q9H2V7 528 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 ACSS2Q9NR19 701 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 INTS7Q9NVH2 962 aaKnown RBP9.43□□□□□ -0.9
CLK3-208ENST00000562626 MSRB2Q9Y3D2 182 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 APC2O95996 2303 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 AHCTF1Q8WYP5 2266 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 A0A0J9YY10 115 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 TARM1B6A8C7 271 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 C9orf172C9J069 976 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 ZW10O43264 779 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 PRAMEF4O60810 478 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 CTSVO60911 334 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 KERAO60938 352 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 CDH16O75309 829 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 TIAF1O95411 115 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 TUBBP07437 444 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 ENO2P09104 434 aaPredicted RBP9.42□□□□□ -0.9
CLK3-208ENST00000562626 EPORP19235 508 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 SLC26A3P40879 764 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 GRIA3P42263 894 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 AP1S2P56377 157 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 SNRPNP63162 240 aaKnown RBP9.42□□□□□ -0.9
CLK3-208ENST00000562626 GABREP78334 506 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 SHC2P98077 582 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 TRA2AQ13595 282 aaKnown RBP eCLIP9.42□□□□□ -0.9
CLK3-208ENST00000562626 ARHGAP19Q14CB8 494 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 RASA2Q15283 850 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 SLC5A12Q1EHB4 618 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 PTCHD3Q3KNS1 767 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 PRAMEF17Q5VTA0 474 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 PRAMEF9Q5VWM5 478 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 ICE2Q659A1 982 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 TRABD2AQ86V40 505 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 GPSM1Q86YR5 675 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 PDPRQ8NCN5 879 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 WDR36Q8NI36 951 aaKnown RBP9.42□□□□□ -0.9
CLK3-208ENST00000562626 MDM1Q8TC05 714 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 SMPDL3AQ92484 453 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 MTBPQ96DY7 904 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 MOCOSQ96EN8 888 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 MED8Q96G25 268 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 FCRL4Q96PJ5 515 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 CD180Q99467 661 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 EGFL8Q99944 293 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 DPYSL5Q9BPU6 564 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 CCDC77Q9BR77 488 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 TMEM109Q9BVC6 243 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 RAB11FIP5Q9BXF6 653 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 NMRAL1Q9HBL8 299 aa9.42□□□□□ -0.9
CLK3-208ENST00000562626 ASCL3Q9NQ33 180 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms