RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 SLC17A4Q9Y2C5 497 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 TIMM22Q9Y584 194 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 GMEB1Q9Y692 573 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 PIAS3Q9Y6X2 628 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 PIKFYVEQ9Y2I7 2098 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 CKAP5Q14008 2032 aa7.3□□□□□ -1.24
VPS39-204ENST00000561818 PLXNB3Q9ULL4 1909 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 KCNE1BA0A087WTH5 132 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 OR5K4A6NMS3 321 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 INPP4BO15327 924 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 SPINT1O43278 529 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 LILRB5O75023 590 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 TBX10O75333 385 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 APBB3O95704 486 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 SLC16A8O95907 504 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 IGLV3-19P01714 112 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 PGRP06401 933 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 C1GALT1C1LP0DN25 315 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 SRFP11831 508 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 HLA-EP13747 358 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 ZNF8P17098 575 aaPredicted RBP7.29□□□□□ -1.24
VPS39-204ENST00000561818 TSPAN8P19075 237 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 HNRNPA2B1P22626 353 aaKnown RBP7.29□□□□□ -1.24
VPS39-204ENST00000561818 PTX3P26022 381 aaPredicted RBP7.29□□□□□ -1.24
VPS39-204ENST00000561818 ACADLP28330 430 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 IMPA1P29218 277 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 S100A3P33764 101 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 KIR3DL1P43629 444 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 BLKP51451 505 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 GALK1P51570 392 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 SLC7A2P52569 658 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 THOP1P52888 689 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 PGGT1BP53609 377 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 ADPRHP54922 357 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 PFN3P60673 137 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 TBPL1P62380 186 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 PRKCQQ04759 706 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 TGM3Q08188 693 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 EPS8Q12929 822 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 BIRC2Q13490 618 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 NAE1Q13564 534 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 ELOAQ14241 798 aaKnown RBP7.29□□□□□ -1.24
VPS39-204ENST00000561818 GK3PQ14409 553 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 ABRAXAS2Q15018 415 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 TAF11Q15544 211 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 FXNQ16595 210 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 CPSF6Q16630 551 aaKnown RBP eCLIP7.29□□□□□ -1.24
VPS39-204ENST00000561818 WSCD2Q2TBF2 565 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 TMEM35AQ53FP2 167 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 PRAMEF14Q5SWL7 426 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 PRAMEF13Q5VWM6 474 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 PAOXQ6QHF9 649 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP7.29□□□□□ -1.24
VPS39-204ENST00000561818 GPR180Q86V85 440 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 SPATA24Q86W54 205 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 HPS6Q86YV9 775 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 LAS2Q8IYD9 372 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 EID3Q8N140 333 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 GJD3Q8N144 294 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 SFRP1Q8N474 314 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 OR8J2Q8NGG1 315 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 PROKR1Q8TCW9 393 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 WDR60Q8WVS4 1066 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 SLC5A11Q8WWX8 675 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 TFGQ92734 400 aaPredicted RBP7.29□□□□□ -1.24
VPS39-204ENST00000561818 NELL1Q92832 810 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 MED8Q96G25 268 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 SCARF2Q96GP6 870 aaPredicted RBP7.29□□□□□ -1.24
VPS39-204ENST00000561818 NAF1Q96HR8 494 aaKnown RBP7.29□□□□□ -1.24
VPS39-204ENST00000561818 GBP5Q96PP8 586 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 KCNA7Q96RP8 456 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 UHRF1Q96T88 793 aaPredicted RBP7.29□□□□□ -1.24
VPS39-204ENST00000561818 NELL2Q99435 816 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 NPAS2Q99743 824 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 KCTD14Q9BQ13 255 aaPredicted RBP7.29□□□□□ -1.24
VPS39-204ENST00000561818 ECSITQ9BQ95 431 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 PHF7Q9BWX1 381 aaPredicted RBP7.29□□□□□ -1.24
VPS39-204ENST00000561818 UGT2B28Q9BY64 529 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 SLC17A9Q9BYT1 436 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 ACPTQ9BZG2 426 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 BTBD1Q9H0C5 482 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 KCNH6Q9H252 994 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 OR52A5Q9H2C5 316 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 SPATA6Q9NWH7 488 aaPredicted RBP7.29□□□□□ -1.24
VPS39-204ENST00000561818 ZSCAN32Q9NX65 697 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 THUMPD1Q9NXG2 353 aaKnown RBP7.29□□□□□ -1.24
VPS39-204ENST00000561818 ANKMY1Q9P2S6 941 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 CD300AQ9UGN4 299 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 ADAM29Q9UKF5 820 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 MMP17Q9ULZ9 603 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 G3BP2Q9UN86 482 aaKnown RBP7.29□□□□□ -1.24
VPS39-204ENST00000561818 SLC22A14Q9Y267 594 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 MAN2B2Q9Y2E5 1009 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 CCL27Q9Y4X3 112 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 MYOFQ9NZM1 2061 aa7.29□□□□□ -1.24
VPS39-204ENST00000561818 COL4A3Q01955 1670 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 DOCK8Q8NF50 2099 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 A0A096LPI6 279 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 A0A1W2PP55 124 aa7.28□□□□□ -1.24
VPS39-204ENST00000561818 TCRBV3S1A0A5B6 114 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms