RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 LIPFP07098 398 aa2.69□□□□□ -1.98
SCFD1-218ENST00000556256 KRT19P08727 400 aa2.69□□□□□ -1.98
SCFD1-218ENST00000556256 OR2T7P0C7T2 308 aa2.69□□□□□ -1.98
SCFD1-218ENST00000556256 LIMK1P53667 647 aa2.69□□□□□ -1.98
SCFD1-218ENST00000556256 CSE1LP55060 971 aaKnown RBP2.69□□□□□ -1.98
SCFD1-218ENST00000556256 PRKCZQ05513 592 aa2.69□□□□□ -1.98
SCFD1-218ENST00000556256 RALGDSQ12967 914 aa2.69□□□□□ -1.98
SCFD1-218ENST00000556256 PRKAA1Q13131 559 aa2.69□□□□□ -1.98
SCFD1-218ENST00000556256 MFAP5Q13361 173 aa2.69□□□□□ -1.98
SCFD1-218ENST00000556256 PTPRCAPQ14761 206 aa2.69□□□□□ -1.98
SCFD1-218ENST00000556256 VWC2Q2TAL6 325 aa2.69□□□□□ -1.98
SCFD1-218ENST00000556256 LETM2Q2VYF4 491 aa2.69□□□□□ -1.98
SCFD1-218ENST00000556256 RNF212Q495C1 297 aa2.69□□□□□ -1.98
SCFD1-218ENST00000556256 CST9LP1Q5W188 147 aa2.69□□□□□ -1.98
SCFD1-218ENST00000556256 KLC3Q6P597 504 aa2.69□□□□□ -1.98
SCFD1-218ENST00000556256 CENPVQ7Z7K6 275 aaPredicted RBP2.69□□□□□ -1.98
SCFD1-218ENST00000556256 ISCA2Q86U28 154 aa2.69□□□□□ -1.98
SCFD1-218ENST00000556256 CPSF7Q8N684 471 aaKnown RBP2.69□□□□□ -1.98
SCFD1-218ENST00000556256 NKAIN3Q8N8D7 197 aa2.69□□□□□ -1.98
SCFD1-218ENST00000556256 PI4KAP1Q8N8J0 262 aa2.69□□□□□ -1.98
SCFD1-218ENST00000556256 OR6J1Q8NGC5 347 aa2.69□□□□□ -1.98
SCFD1-218ENST00000556256 ZFAND2BQ8WV99 257 aa2.69□□□□□ -1.98
SCFD1-218ENST00000556256 TEKT4Q8WW24 435 aa2.69□□□□□ -1.98
SCFD1-218ENST00000556256 SEMA4DQ92854 862 aa2.69□□□□□ -1.98
SCFD1-218ENST00000556256 RMDN1Q96DB5 314 aa2.69□□□□□ -1.98
SCFD1-218ENST00000556256 LMF2Q9BU23 707 aaKnown RBP2.69□□□□□ -1.98
SCFD1-218ENST00000556256 AP1M1Q9BXS5 423 aa2.69□□□□□ -1.98
SCFD1-218ENST00000556256 VN1R1Q9GZP7 353 aa2.69□□□□□ -1.98
SCFD1-218ENST00000556256 ARRDC1-AS1Q9H2J1 176 aa2.69□□□□□ -1.98
SCFD1-218ENST00000556256 CNOT10Q9H9A5 744 aaKnown RBP2.69□□□□□ -1.98
SCFD1-218ENST00000556256 TBC1D17Q9HA65 648 aa2.69□□□□□ -1.98
SCFD1-218ENST00000556256 ACKR4Q9NPB9 350 aa2.69□□□□□ -1.98
SCFD1-218ENST00000556256 CHST11Q9NPF2 352 aa2.69□□□□□ -1.98
SCFD1-218ENST00000556256 ZNF701Q9NV72 531 aaPredicted RBP2.69□□□□□ -1.98
SCFD1-218ENST00000556256 GRIP1Q9Y3R0 1128 aa2.69□□□□□ -1.98
SCFD1-218ENST00000556256 SPIN1Q9Y657 262 aaPredicted RBP2.69□□□□□ -1.98
SCFD1-218ENST00000556256 COL16A1Q07092 1604 aaPredicted RBP2.68□□□□□ -1.98
SCFD1-218ENST00000556256 CCDC188H7C350 402 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 TRIM77I1YAP6 450 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 TSPAN1O60635 241 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 RECQL5O94762 991 aaPredicted RBP2.68□□□□□ -1.98
SCFD1-218ENST00000556256 CELF2O95319 508 aaKnown RBP2.68□□□□□ -1.98
SCFD1-218ENST00000556256 WDPCPO95876 746 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 H1F0P07305 194 aaKnown RBP2.68□□□□□ -1.98
SCFD1-218ENST00000556256 QDPRP09417 244 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 CCDC175P0C221 793 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 ACP2P11117 423 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 UGT1A4P22310 534 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 EPHA2P29317 976 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 NKX2-1P43699 371 aaPredicted RBP2.68□□□□□ -1.98
SCFD1-218ENST00000556256 RAB28P51157 221 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 THOP1P52888 689 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 ELAVL2Q12926 359 aaKnown RBP2.68□□□□□ -1.98
SCFD1-218ENST00000556256 COG2Q14746 738 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 KRBOX4Q5JUW0 171 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 SPECC1Q5M775 1068 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 ARMC4Q5T2S8 1044 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 NDUFAF5Q5TEU4 345 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 C6orf163Q5TEZ5 329 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 PRR27Q6MZM9 219 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 TMPRSS11FQ6ZWK6 438 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 CHST3Q7LGC8 479 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 CCDC186Q7Z3E2 898 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 SLFN11Q7Z7L1 901 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 IQCHQ86VS3 1027 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 GPALPP1Q8IXQ4 340 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 CRYBG2Q8N1P7 616 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 Q8N7P7 452 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 ATL1Q8WXF7 558 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 RASL10AQ92737 203 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 VPS33AQ96AX1 596 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 NXNL1Q96CM4 212 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 HDAC11Q96DB2 347 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 MTERF3Q96E29 417 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 SPDL1Q96EA4 605 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 MAGED4Q96JG8 741 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 SGK494Q96LW2 274 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 FER1L6-AS2Q96M78 137 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 ZMAT2Q96NC0 199 aaKnown RBP2.68□□□□□ -1.98
SCFD1-218ENST00000556256 MUS81Q96NY9 551 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 NAA11Q9BSU3 229 aaPredicted RBP2.68□□□□□ -1.98
SCFD1-218ENST00000556256 EDEM3Q9BZQ6 932 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 ZCCHC17Q9NP64 241 aaKnown RBP2.68□□□□□ -1.98
SCFD1-218ENST00000556256 TUBE1Q9UJT0 475 aa2.68□□□□□ -1.98
SCFD1-218ENST00000556256 ZHX1Q9UKY1 873 aaPredicted RBP2.68□□□□□ -1.98
SCFD1-218ENST00000556256 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP2.68□□□□□ -1.983e-6■□□□□ 10.3
SCFD1-218ENST00000556256 A0A1W2PPR1 153 aa2.67□□□□□ -1.98
SCFD1-218ENST00000556256 MED19A0JLT2 244 aaPredicted RBP2.67□□□□□ -1.98
SCFD1-218ENST00000556256 EPM2AB3EWF7 344 aa2.67□□□□□ -1.98
SCFD1-218ENST00000556256 APOA4P06727 396 aa2.67□□□□□ -1.98
SCFD1-218ENST00000556256 RAB40ALP0C0E4 278 aa2.67□□□□□ -1.98
SCFD1-218ENST00000556256 CYP11B2P19099 503 aa2.67□□□□□ -1.98
SCFD1-218ENST00000556256 ACHEP22303 614 aa2.67□□□□□ -1.98
SCFD1-218ENST00000556256 MPZP25189 248 aa2.67□□□□□ -1.98
SCFD1-218ENST00000556256 PCGF2P35227 344 aa2.67□□□□□ -1.98
SCFD1-218ENST00000556256 MTHFRP42898 656 aa2.67□□□□□ -1.98
SCFD1-218ENST00000556256 MATR3P43243 847 aaKnown RBP eCLIP2.67□□□□□ -1.98
SCFD1-218ENST00000556256 MAT1AQ00266 395 aaKnown RBP2.67□□□□□ -1.98
SCFD1-218ENST00000556256 HSPB3Q12988 150 aa2.67□□□□□ -1.98
SCFD1-218ENST00000556256 PLA2G7Q13093 441 aa2.67□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms