RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 THEMIS2Q5TEJ8 643 aa20.46■□□□□ 0.87
VPS29-206ENST00000549578 HES3Q5TGS1 186 aa20.46■□□□□ 0.87
VPS29-206ENST00000549578 AGBL2Q5U5Z8 902 aa20.46■□□□□ 0.87
VPS29-206ENST00000549578 SPESP1Q6UW49 350 aa20.46■□□□□ 0.87
VPS29-206ENST00000549578 RBM44Q6ZP01 1051 aaKnown RBP20.46■□□□□ 0.87
VPS29-206ENST00000549578 B3GNT8Q7Z7M8 397 aa20.46■□□□□ 0.87
VPS29-206ENST00000549578 TCAIMQ8N3R3 496 aa20.46■□□□□ 0.87
VPS29-206ENST00000549578 GOLGA6L1Q8N7Z2 621 aa20.46■□□□□ 0.87
VPS29-206ENST00000549578 OR4D9Q8NGE8 314 aa20.46■□□□□ 0.87
VPS29-206ENST00000549578 TCP10LQ8TDR4 215 aa20.46■□□□□ 0.87
VPS29-206ENST00000549578 SLC17A7Q9P2U7 560 aa20.46■□□□□ 0.87
VPS29-206ENST00000549578 TAC3Q9UHF0 121 aa20.46■□□□□ 0.87
VPS29-206ENST00000549578 ASB1Q9Y576 335 aa20.46■□□□□ 0.87
VPS29-206ENST00000549578 SPTBN4Q9H254 2564 aa20.45■□□□□ 0.86
VPS29-206ENST00000549578 IGHV5-10-1A0A0J9YXX1 117 aa20.45■□□□□ 0.86
VPS29-206ENST00000549578 A8MU76 341 aa20.45■□□□□ 0.86
VPS29-206ENST00000549578 KLK8O60259 260 aa20.45■□□□□ 0.86
VPS29-206ENST00000549578 SMIM24O75264 130 aa20.45■□□□□ 0.86
VPS29-206ENST00000549578 LSSP48449 732 aa20.45■□□□□ 0.86
VPS29-206ENST00000549578 PDX1P52945 283 aa20.45■□□□□ 0.86
VPS29-206ENST00000549578 PUM1Q14671 1186 aaKnown RBP eCLIP20.45■□□□□ 0.86
VPS29-206ENST00000549578 SF1Q15637 639 aaKnown RBP20.45■□□□□ 0.86
VPS29-206ENST00000549578 CCDC153Q494R4 210 aa20.45■□□□□ 0.86
VPS29-206ENST00000549578 TTMPQ5BVD1 217 aa20.45■□□□□ 0.86
VPS29-206ENST00000549578 CDCP2Q5VXM1 449 aa20.45■□□□□ 0.86
VPS29-206ENST00000549578 CAPN13Q6MZZ7 669 aaPredicted RBP20.45■□□□□ 0.86
VPS29-206ENST00000549578 SLITRK4Q8IW52 837 aa20.45■□□□□ 0.86
VPS29-206ENST00000549578 PTGR2Q8N8N7 351 aaPredicted RBP20.45■□□□□ 0.86
VPS29-206ENST00000549578 CCDC63Q8NA47 563 aa20.45■□□□□ 0.86
VPS29-206ENST00000549578 OR2A1Q8NGT9 310 aa20.45■□□□□ 0.86
VPS29-206ENST00000549578 SLC22A18Q96BI1 424 aa20.45■□□□□ 0.86
VPS29-206ENST00000549578 PHF21BQ96EK2 531 aa20.45■□□□□ 0.86
VPS29-206ENST00000549578 FAM111AQ96PZ2 611 aa20.45■□□□□ 0.86
VPS29-206ENST00000549578 MAP3K3Q99759 626 aa20.45■□□□□ 0.86
VPS29-206ENST00000549578 MIPEPQ99797 713 aa20.45■□□□□ 0.86
VPS29-206ENST00000549578 DPYSL5Q9BPU6 564 aa20.45■□□□□ 0.86
VPS29-206ENST00000549578 SGPP1Q9BX95 441 aa20.45■□□□□ 0.86
VPS29-206ENST00000549578 ACBD3Q9H3P7 528 aa20.45■□□□□ 0.86
VPS29-206ENST00000549578 INTS7Q9NVH2 962 aaKnown RBP20.45■□□□□ 0.86
VPS29-206ENST00000549578 PCDHB11Q9Y5F2 797 aa20.45■□□□□ 0.86
VPS29-206ENST00000549578 SNRNP200O75643 2136 aaKnown RBP20.45■□□□□ 0.86
VPS29-206ENST00000549578 RASSF9O75901 435 aa20.44■□□□□ 0.86
VPS29-206ENST00000549578 PVRP15151 417 aa20.44■□□□□ 0.86
VPS29-206ENST00000549578 CDH3P22223 829 aa20.44■□□□□ 0.86
VPS29-206ENST00000549578 GGT5P36269 586 aa20.44■□□□□ 0.86
VPS29-206ENST00000549578 SLC6A12P48065 614 aa20.44■□□□□ 0.86
VPS29-206ENST00000549578 ALDH18A1P54886 795 aaKnown RBP20.44■□□□□ 0.86
VPS29-206ENST00000549578 SETDB1Q15047 1291 aa20.44■□□□□ 0.86
VPS29-206ENST00000549578 PHF19Q5T6S3 580 aa20.44■□□□□ 0.86
VPS29-206ENST00000549578 PRAMEF13Q5VWM6 474 aa20.44■□□□□ 0.86
VPS29-206ENST00000549578 ARMC2Q8NEN0 867 aa20.44■□□□□ 0.86
VPS29-206ENST00000549578 ATP6V1G3Q96LB4 118 aa20.44■□□□□ 0.86
VPS29-206ENST00000549578 CCDC74BQ96LY2 380 aa20.44■□□□□ 0.86
VPS29-206ENST00000549578 OR4K3Q96R72 315 aa20.44■□□□□ 0.86
VPS29-206ENST00000549578 KLHL25Q9H0H3 589 aa20.44■□□□□ 0.86
VPS29-206ENST00000549578 SSU72Q9NP77 194 aaKnown RBP20.44■□□□□ 0.86
VPS29-206ENST00000549578 PDP2Q9P2J9 529 aa20.44■□□□□ 0.86
VPS29-206ENST00000549578 SLC22A14Q9Y267 594 aa20.44■□□□□ 0.86
VPS29-206ENST00000549578 PCM1Q15154 2024 aa20.44■□□□□ 0.86
VPS29-206ENST00000549578 TLCD2A6NGC4 264 aa20.43■□□□□ 0.86
VPS29-206ENST00000549578 LRRC14BA6NHZ5 514 aa20.43■□□□□ 0.86
VPS29-206ENST00000549578 A8MT66 165 aa20.43■□□□□ 0.86
VPS29-206ENST00000549578 DLX3O60479 287 aa20.43■□□□□ 0.86
VPS29-206ENST00000549578 WDR47O94967 919 aa20.43■□□□□ 0.86
VPS29-206ENST00000549578 MT-CO3P00414 261 aa20.43■□□□□ 0.86
VPS29-206ENST00000549578 THRAP10827 490 aa20.43■□□□□ 0.86
VPS29-206ENST00000549578 TAC1P20366 129 aa20.43■□□□□ 0.86
VPS29-206ENST00000549578 CCND1P24385 295 aa20.43■□□□□ 0.86
VPS29-206ENST00000549578 SLC5A12Q1EHB4 618 aa20.43■□□□□ 0.86
VPS29-206ENST00000549578 CACHD1Q5VU97 1274 aa20.43■□□□□ 0.86
VPS29-206ENST00000549578 THOC6Q86W42 341 aaKnown RBP20.43■□□□□ 0.86
VPS29-206ENST00000549578 RCBTB1Q8NDN9 531 aa20.43■□□□□ 0.86
VPS29-206ENST00000549578 OR2L3Q8NG85 312 aa20.43■□□□□ 0.86
VPS29-206ENST00000549578 CD180Q99467 661 aa20.43■□□□□ 0.86
VPS29-206ENST00000549578 CNOT10Q9H9A5 744 aaKnown RBP20.43■□□□□ 0.86
VPS29-206ENST00000549578 KCNK9Q9NPC2 374 aa20.43■□□□□ 0.86
VPS29-206ENST00000549578 SH2B3Q9UQQ2 575 aa20.43■□□□□ 0.86
VPS29-206ENST00000549578 KLHL20Q9Y2M5 609 aa20.43■□□□□ 0.86
VPS29-206ENST00000549578 IGHV5-51A0A0C4DH38 117 aa20.43■□□□□ 0.86
VPS29-206ENST00000549578 G3V2L1 256 aa20.43■□□□□ 0.86
VPS29-206ENST00000549578 AGRPO00253 132 aa20.43■□□□□ 0.86
VPS29-206ENST00000549578 CCNT2O60583 730 aaKnown RBP20.43■□□□□ 0.86
VPS29-206ENST00000549578 STK16O75716 305 aa20.43■□□□□ 0.86
VPS29-206ENST00000549578 IPO13O94829 963 aaKnown RBP20.43■□□□□ 0.86
VPS29-206ENST00000549578 SIX3O95343 332 aaPredicted RBP20.43■□□□□ 0.86
VPS29-206ENST00000549578 ZFP36L1Q07352 338 aaKnown RBP20.43■□□□□ 0.86
VPS29-206ENST00000549578 KIAA1614Q5VZ46 1190 aa20.43■□□□□ 0.86
VPS29-206ENST00000549578 ICE2Q659A1 982 aa20.43■□□□□ 0.86
VPS29-206ENST00000549578 UBTD2Q8WUN7 234 aa20.43■□□□□ 0.86
VPS29-206ENST00000549578 ADAMTS14Q8WXS8 1223 aa20.43■□□□□ 0.86
VPS29-206ENST00000549578 PITPNM3Q9BZ71 974 aa20.43■□□□□ 0.86
VPS29-206ENST00000549578 CD244Q9BZW8 370 aa20.43■□□□□ 0.86
VPS29-206ENST00000549578 TMCO1Q9UM00 188 aa20.43■□□□□ 0.86
VPS29-206ENST00000549578 CLCA2Q9UQC9 943 aa20.43■□□□□ 0.86
VPS29-206ENST00000549578 A0A0J9YY10 115 aa20.42■□□□□ 0.86
VPS29-206ENST00000549578 SLC9B1P1A6NJY1 282 aa20.42■□□□□ 0.86
VPS29-206ENST00000549578 MYL2P10916 166 aa20.42■□□□□ 0.86
VPS29-206ENST00000549578 ST6GAL1P15907 406 aa20.42■□□□□ 0.86
VPS29-206ENST00000549578 NPPBP16860 134 aa20.42■□□□□ 0.86
VPS29-206ENST00000549578 ATP5F1P24539 256 aaPredicted RBP20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms