RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 ELFN1P0C7U0 828 aa7.65□□□□□ -1.19
VPS13D-211ENST00000543710 ZNF3P17036 446 aa7.65□□□□□ -1.19
VPS13D-211ENST00000543710 CTSKP43235 329 aa7.65□□□□□ -1.19
VPS13D-211ENST00000543710 DNASE1L1P49184 302 aa7.65□□□□□ -1.19
VPS13D-211ENST00000543710 SEMG2Q02383 582 aa7.65□□□□□ -1.19
VPS13D-211ENST00000543710 NFE2L1Q14494 772 aa7.65□□□□□ -1.19
VPS13D-211ENST00000543710 NRF1Q16656 503 aa7.65□□□□□ -1.19
VPS13D-211ENST00000543710 ASTE1Q2TB18 679 aaPredicted RBP7.65□□□□□ -1.19
VPS13D-211ENST00000543710 DDX59Q5T1V6 619 aaKnown RBP eCLIP7.65□□□□□ -1.19
VPS13D-211ENST00000543710 PPP1R26Q5T8A7 1209 aaPredicted RBP7.65□□□□□ -1.19
VPS13D-211ENST00000543710 LAIR1Q6GTX8 287 aa7.65□□□□□ -1.19
VPS13D-211ENST00000543710 SLC9B2Q86UD5 537 aa7.65□□□□□ -1.19
VPS13D-211ENST00000543710 PDSS2Q86YH6 399 aa7.65□□□□□ -1.19
VPS13D-211ENST00000543710 SLC44A3Q8N4M1 653 aa7.65□□□□□ -1.19
VPS13D-211ENST00000543710 POU5F2Q8N7G0 328 aa7.65□□□□□ -1.19
VPS13D-211ENST00000543710 EFCAB11Q9BUY7 163 aa7.65□□□□□ -1.19
VPS13D-211ENST00000543710 GRHL1Q9NZI5 618 aa7.65□□□□□ -1.19
VPS13D-211ENST00000543710 SPATA7Q9P0W8 599 aa7.65□□□□□ -1.19
VPS13D-211ENST00000543710 PCDHGA2Q9Y5H1 932 aa7.65□□□□□ -1.19
VPS13D-211ENST00000543710 RAB36O95755 333 aa7.65□□□□□ -1.19
VPS13D-211ENST00000543710 NUDT14O95848 222 aa7.65□□□□□ -1.19
VPS13D-211ENST00000543710 GLDCP23378 1020 aa7.65□□□□□ -1.19
VPS13D-211ENST00000543710 GNALP38405 381 aa7.65□□□□□ -1.19
VPS13D-211ENST00000543710 GBX2P52951 348 aaPredicted RBP7.65□□□□□ -1.19
VPS13D-211ENST00000543710 PSPHP78330 225 aa7.65□□□□□ -1.19
VPS13D-211ENST00000543710 APTXQ7Z2E3 356 aaKnown RBP7.65□□□□□ -1.19
VPS13D-211ENST00000543710 RALGPS2Q86X27 583 aaPredicted RBP7.65□□□□□ -1.19
VPS13D-211ENST00000543710 OR4C15Q8NGM1 316 aa7.65□□□□□ -1.19
VPS13D-211ENST00000543710 HDAC2Q92769 488 aaKnown RBP7.65□□□□□ -1.19
VPS13D-211ENST00000543710 CMKLR1Q99788 373 aa7.65□□□□□ -1.19
VPS13D-211ENST00000543710 CAPN10Q9HC96 672 aa7.65□□□□□ -1.19
VPS13D-211ENST00000543710 GKN1Q9NS71 199 aa7.65□□□□□ -1.19
VPS13D-211ENST00000543710 MTMR10Q9NXD2 777 aa7.65□□□□□ -1.19
VPS13D-211ENST00000543710 RBPJLQ9UBG7 517 aa7.65□□□□□ -1.19
VPS13D-211ENST00000543710 P2RX2Q9UBL9 471 aa7.65□□□□□ -1.19
VPS13D-211ENST00000543710 SLC6A14Q9UN76 642 aa7.65□□□□□ -1.19
VPS13D-211ENST00000543710 BHMG1C9JSJ3 638 aaPredicted RBP7.64□□□□□ -1.19
VPS13D-211ENST00000543710 CCNKO75909 580 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 PRAMEF12O95522 483 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 C22orf31O95567 290 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 YES1P07947 543 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 SYT16Q17RD7 645 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 ZNF630Q2M218 657 aaPredicted RBP7.64□□□□□ -1.19
VPS13D-211ENST00000543710 IQCCQ4KMZ1 466 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 SLC9A4Q6AI14 798 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 ISLR2Q6UXK2 745 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 RTL4Q6ZR62 310 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 GALNT7Q86SF2 657 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 DCP2Q8IU60 420 aaKnown RBP7.64□□□□□ -1.19
VPS13D-211ENST00000543710 CLEC10AQ8IUN9 316 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 SIDT2Q8NBJ9 832 aaKnown RBP7.64□□□□□ -1.19
VPS13D-211ENST00000543710 ADAMTS15Q8TE58 950 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 CPXM1Q96SM3 734 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 PCDHB18PQ96TA0 734 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 ZSCAN5AQ9BUG6 496 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 PITHD1Q9GZP4 211 aaPredicted RBP7.64□□□□□ -1.19
VPS13D-211ENST00000543710 SDHAF3Q9NRP4 125 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 GPRC5BQ9NZH0 403 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 RIMKLBQ9ULI2 386 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 CCDC88AQ3V6T2 1871 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 CLDN4O14493 209 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 FADS2O95864 444 aaKnown RBP7.64□□□□□ -1.19
VPS13D-211ENST00000543710 MNDAP41218 407 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 ALDH3A2P51648 485 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 NAGLUP54802 743 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 ZNF423Q2M1K9 1284 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 FAM91A1Q658Y4 838 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 GRHL2Q6ISB3 625 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 PLET1Q6UQ28 207 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 GK5Q6ZS86 529 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 KCTD8Q6ZWB6 473 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 KCNK18Q7Z418 384 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 NETO1Q8TDF5 533 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 SLC13A3Q8WWT9 602 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 COL26A1Q96A83 441 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 NXNL1Q96CM4 212 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 KREMEN1Q96MU8 473 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 TRIM39Q9HCM9 518 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 IFT46Q9NQC8 304 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 DDX4Q9NQI0 724 aaKnown RBP7.64□□□□□ -1.19
VPS13D-211ENST00000543710 ACTR3BQ9P1U1 418 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 MGAT4BQ9UQ53 548 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 PCDHGA10Q9Y5H3 936 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 TIMM13Q9Y5L4 95 aaPredicted RBP7.64□□□□□ -1.19
VPS13D-211ENST00000543710 ISM1B1AKI9 464 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 PTGES3LE9PB15 166 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 ADAMTS3O15072 1205 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 DUX1O43812 170 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 MFSD11O43934 449 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 PEX11AO75192 247 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 IFNA6P05013 189 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 ABCG1P45844 678 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 ZNF132P52740 706 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 SMSP52788 366 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 MYBPC1Q00872 1141 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 NR0B2Q15466 257 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 C15orf59Q2T9L4 293 aaPredicted RBP7.64□□□□□ -1.19
VPS13D-211ENST00000543710 DEF8Q6ZN54 512 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 TFAP2DQ7Z6R9 452 aa7.64□□□□□ -1.19
VPS13D-211ENST00000543710 ADGRG2Q8IZP9 1017 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms