RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 TRAPPC9Q96Q05 1148 aa15.85■□□□□ 0.13
COL4A1-204ENST00000543140 TSC22D3Q99576 134 aa15.85■□□□□ 0.13
COL4A1-204ENST00000543140 MTIF3Q9H2K0 278 aaKnown RBP15.85■□□□□ 0.13
COL4A1-204ENST00000543140 EDDM13A0A1B0GTR0 161 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 DLGAP1O14490 977 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 LZTS3O60299 673 aaPredicted RBP15.84■□□□□ 0.13
COL4A1-204ENST00000543140 CLPTM1O96005 669 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 GNAO1P09471 354 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 FCGR1AP12314 374 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 C6P13671 934 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 AMD1P17707 334 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 ITGB7P26010 798 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 GPR1P46091 355 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 VASPP50552 380 aaPredicted RBP15.84■□□□□ 0.13
COL4A1-204ENST00000543140 INTS11Q5TA45 600 aaKnown RBP15.84■□□□□ 0.13
COL4A1-204ENST00000543140 NOXRED1Q6NXP6 359 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 CARM1Q86X55 608 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 FAM86B1Q8N7N1 296 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 CDC26Q8NHZ8 85 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 NUS1Q96E22 293 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 CCDC138Q96M89 665 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 FAM129BQ96TA1 746 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 INVSQ9Y283 1065 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 ATG2BQ96BY7 2078 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 TBC1D3BA6NDS4 549 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 ENO4A6NNW6 628 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 H3BM21 787 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 EI24O14681 340 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 ACOX3O15254 700 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 GMNNO75496 209 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 OR6B1O95007 311 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 LDLRP01130 860 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 ANXA6P08133 673 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 PRPS2P11908 318 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 ADRB3P13945 408 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 IMPA1P29218 277 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 TXNL4AP83876 142 aaKnown RBP15.84■□□□□ 0.13
COL4A1-204ENST00000543140 RUNDC3AQ59EK9 446 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 C10orf111Q8N326 155 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 PAPD5Q8NDF8 572 aaKnown RBP15.84■□□□□ 0.13
COL4A1-204ENST00000543140 FBXO30Q8TB52 745 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 C9orf16Q9BUW7 83 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 SERHLQ9NQF3 203 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 GPRC5BQ9NZH0 403 aa15.84■□□□□ 0.13
COL4A1-204ENST00000543140 XIRP2A4UGR9 3374 aa15.83■□□□□ 0.13
COL4A1-204ENST00000543140 NPC1O15118 1278 aa15.83■□□□□ 0.12
COL4A1-204ENST00000543140 FSHRP23945 695 aa15.83■□□□□ 0.12
COL4A1-204ENST00000543140 CDKN2CP42773 168 aa15.83■□□□□ 0.12
COL4A1-204ENST00000543140 ELAVL3Q14576 367 aaKnown RBP15.83■□□□□ 0.12
COL4A1-204ENST00000543140 ATP6AP1Q15904 470 aa15.83■□□□□ 0.12
COL4A1-204ENST00000543140 KRT80Q6KB66 452 aa15.83■□□□□ 0.12
COL4A1-204ENST00000543140 CRTC3Q6UUV7 619 aa15.83■□□□□ 0.12
COL4A1-204ENST00000543140 ENPP6Q6UWR7 440 aa15.83■□□□□ 0.12
COL4A1-204ENST00000543140 ZNF548Q8NEK5 533 aaPredicted RBP15.83■□□□□ 0.12
COL4A1-204ENST00000543140 FOPNLQ96NB1 174 aa15.83■□□□□ 0.12
COL4A1-204ENST00000543140 FAM83CQ9BQN1 747 aa15.83■□□□□ 0.12
COL4A1-204ENST00000543140 PAIP1Q9H074 479 aaKnown RBP15.83■□□□□ 0.12
COL4A1-204ENST00000543140 CARS2Q9HA77 564 aaKnown RBP15.83■□□□□ 0.12
COL4A1-204ENST00000543140 KIF26AQ9ULI4 1882 aaPredicted RBP15.83■□□□□ 0.12
COL4A1-204ENST00000543140 PSMD11O00231 422 aa15.83■□□□□ 0.12
COL4A1-204ENST00000543140 TFAP2AP05549 437 aa15.83■□□□□ 0.12
COL4A1-204ENST00000543140 ZNF23P17027 643 aa15.83■□□□□ 0.12
COL4A1-204ENST00000543140 RPL10P27635 214 aaKnown RBP15.83■□□□□ 0.12
COL4A1-204ENST00000543140 POLE2P56282 527 aa15.83■□□□□ 0.12
COL4A1-204ENST00000543140 KCNC3Q14003 757 aa15.83■□□□□ 0.12
COL4A1-204ENST00000543140 LIPJQ5W064 366 aa15.83■□□□□ 0.12
COL4A1-204ENST00000543140 OR4F3Q6IEY1 312 aa15.83■□□□□ 0.12
COL4A1-204ENST00000543140 TMIEQ8NEW7 156 aa15.83■□□□□ 0.12
COL4A1-204ENST00000543140 MAGEE2Q8TD90 523 aaPredicted RBP15.83■□□□□ 0.12
COL4A1-204ENST00000543140 ATL1Q8WXF7 558 aa15.83■□□□□ 0.12
COL4A1-204ENST00000543140 TFAP2CQ92754 450 aa15.83■□□□□ 0.12
COL4A1-204ENST00000543140 GRIP2Q9C0E4 1043 aa15.83■□□□□ 0.12
COL4A1-204ENST00000543140 IGFLR1Q9H665 355 aa15.83■□□□□ 0.12
COL4A1-204ENST00000543140 ZNF696Q9H7X3 374 aa15.83■□□□□ 0.12
COL4A1-204ENST00000543140 LIMD1Q9UGP4 676 aa15.83■□□□□ 0.12
COL4A1-204ENST00000543140 ADGRE2Q9UHX3 823 aa15.83■□□□□ 0.12
COL4A1-204ENST00000543140 PRKAB1Q9Y478 270 aa15.83■□□□□ 0.12
COL4A1-204ENST00000543140 DOCK9Q9BZ29 2069 aa15.82■□□□□ 0.12
COL4A1-204ENST00000543140 H0Y858 1186 aa15.82■□□□□ 0.12
COL4A1-204ENST00000543140 C1QCP02747 245 aa15.82■□□□□ 0.12
COL4A1-204ENST00000543140 CDH1P12830 882 aa15.82■□□□□ 0.12
COL4A1-204ENST00000543140 PRPH2P23942 346 aa15.82■□□□□ 0.12
COL4A1-204ENST00000543140 MAPK1P28482 360 aa15.82■□□□□ 0.12
COL4A1-204ENST00000543140 TMTC4Q5T4D3 741 aa15.82■□□□□ 0.12
COL4A1-204ENST00000543140 TANGO2Q6ICL3 276 aa15.82■□□□□ 0.12
COL4A1-204ENST00000543140 NLRP8Q86W28 1048 aa15.82■□□□□ 0.12
COL4A1-204ENST00000543140 GALNT13Q8IUC8 556 aa15.82■□□□□ 0.12
COL4A1-204ENST00000543140 SYT12Q8IV01 421 aa15.82■□□□□ 0.12
COL4A1-204ENST00000543140 FAM47BQ8NA70 645 aa15.82■□□□□ 0.12
COL4A1-204ENST00000543140 OR7A2PQ8NGA2 310 aa15.82■□□□□ 0.12
COL4A1-204ENST00000543140 WDR20Q8TBZ3 569 aa15.82■□□□□ 0.12
COL4A1-204ENST00000543140 CAAP1Q9H8G2 361 aa15.82■□□□□ 0.12
COL4A1-204ENST00000543140 SGK2Q9HBY8 427 aa15.82■□□□□ 0.12
COL4A1-204ENST00000543140 ATXN10Q9UBB4 475 aa15.82■□□□□ 0.12
COL4A1-204ENST00000543140 VPS29Q9UBQ0 182 aa15.82■□□□□ 0.12
COL4A1-204ENST00000543140 ATG2AQ2TAZ0 1938 aa15.82■□□□□ 0.12
COL4A1-204ENST00000543140 RASAL1O95294 804 aa15.82■□□□□ 0.12
COL4A1-204ENST00000543140 CLIC3O95833 236 aa15.82■□□□□ 0.12
COL4A1-204ENST00000543140 ELP6Q0PNE2 266 aa15.82■□□□□ 0.12
COL4A1-204ENST00000543140 OTUD3Q5T2D3 398 aaPredicted RBP15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms