RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 MMEL1Q495T6 779 aa11.88□□□□□ -0.51
AP003559.1-201ENST00000540906 TIGD2Q4W5G0 525 aa11.88□□□□□ -0.51
AP003559.1-201ENST00000540906 CAPRIN2Q6IMN6 1127 aaKnown RBP11.88□□□□□ -0.51
AP003559.1-201ENST00000540906 UNC5DQ6UXZ4 953 aa11.88□□□□□ -0.51
AP003559.1-201ENST00000540906 BNC2Q6ZN30 1099 aaPredicted RBP11.88□□□□□ -0.51
AP003559.1-201ENST00000540906 SLCO4C1Q6ZQN7 724 aa11.88□□□□□ -0.51
AP003559.1-201ENST00000540906 TMPRSS11BQ86T26 416 aa11.88□□□□□ -0.51
AP003559.1-201ENST00000540906 TRIM69Q86WT6 500 aa11.88□□□□□ -0.51
AP003559.1-201ENST00000540906 ZFAND4Q86XD8 727 aa11.88□□□□□ -0.51
AP003559.1-201ENST00000540906 ARHGAP24Q8N264 748 aa11.88□□□□□ -0.51
AP003559.1-201ENST00000540906 SPDL1Q96EA4 605 aa11.88□□□□□ -0.51
AP003559.1-201ENST00000540906 PPP3R2Q96LZ3 170 aa11.88□□□□□ -0.51
AP003559.1-201ENST00000540906 HHIPQ96QV1 700 aa11.88□□□□□ -0.51
AP003559.1-201ENST00000540906 MRPL1Q9BYD6 325 aaKnown RBP11.88□□□□□ -0.51
AP003559.1-201ENST00000540906 FOXQ1Q9C009 403 aa11.88□□□□□ -0.51
AP003559.1-201ENST00000540906 OSGEPL1Q9H4B0 414 aa11.88□□□□□ -0.51
AP003559.1-201ENST00000540906 ELOVL6Q9H5J4 265 aa11.88□□□□□ -0.51
AP003559.1-201ENST00000540906 RNPEPL1Q9HAU8 725 aa11.88□□□□□ -0.51
AP003559.1-201ENST00000540906 SLAMF8Q9P0V8 285 aa11.88□□□□□ -0.51
AP003559.1-201ENST00000540906 SCHIP1Q9P0W5 487 aaPredicted RBP11.88□□□□□ -0.51
AP003559.1-201ENST00000540906 USP36Q9P275 1121 aaKnown RBP11.88□□□□□ -0.51
AP003559.1-201ENST00000540906 DUSP12Q9UNI6 340 aa11.88□□□□□ -0.51
AP003559.1-201ENST00000540906 CYP8B1Q9UNU6 501 aa11.88□□□□□ -0.51
AP003559.1-201ENST00000540906 GPSM3Q9Y4H4 160 aa11.88□□□□□ -0.51
AP003559.1-201ENST00000540906 PLXND1Q9Y4D7 1925 aa11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 A0A0C4DFX4 3053 aa11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 KANSL1LA0AUZ9 987 aa11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 MAP3K7O43318 606 aa11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 SEC22BO75396 215 aa11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 PSMG1O95456 288 aa11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 IGHV4-34P06331 123 aa11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 EZRP15311 586 aaKnown RBP11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 TACR1P25103 407 aa11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 PSMB5P28074 263 aa11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 DGKQP52824 942 aa11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 PLOD1Q02809 727 aaPredicted RBP11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 DMPKQ09013 629 aa11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 DDX39BQ13838 428 aaKnown RBP11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 RCAN2Q14206 197 aa11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 CAPRIN1Q14444 709 aaKnown RBP11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 TLR1Q15399 786 aa11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 IMPG1Q17R60 797 aa11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 C1orf146Q5VVC0 180 aa11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 FRG2Q64ET8 278 aa11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 ANO7Q6IWH7 933 aa11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 PGBD3Q8N328 593 aa11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 LIX1Q8N485 282 aa11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 FAM160A2Q8N612 972 aaPredicted RBP11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 KRTCAP2Q8N6L1 136 aa11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 OR2T34Q8NGX1 318 aa11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 CCL4L1Q8NHW4 92 aa11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 ASB12Q8WXK4 309 aa11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 SCARF2Q96GP6 870 aaPredicted RBP11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 FRG2BQ96QU4 278 aa11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 MTERF1Q99551 399 aaKnown RBP11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 GPATCH1Q9BRR8 931 aaKnown RBP11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 LMAN1LQ9HAT1 526 aa11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 PRDM8Q9NQV8 689 aa11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 ZIM2Q9NZV7 527 aa11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 DNMT3AQ9Y6K1 912 aaPredicted RBP11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 LRP4O75096 1905 aa11.87□□□□□ -0.51
AP003559.1-201ENST00000540906 PRSS38A1L453 326 aa11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 OR52A4PA6NMU1 304 aa11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 CACNB4O00305 520 aaPredicted RBP11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 IFRD1O00458 451 aaPredicted RBP11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 CIB2O75838 187 aa11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 ERGP11308 486 aa11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 BCKDHAP12694 445 aa11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 MAPK9P45984 424 aa11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 POLR2JP52435 117 aaKnown RBP11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 ATXN3P54252 364 aaPredicted RBP11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 PCDH1Q08174 1060 aa11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 E2F2Q14209 437 aa11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 USP39Q53GS9 565 aaKnown RBP11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 LIPJQ5W064 366 aa11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 GRHL2Q6ISB3 625 aa11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 CAPN13Q6MZZ7 669 aaPredicted RBP11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 SLC2A7Q6PXP3 512 aa11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 ENPP7Q6UWV6 458 aa11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 GALNT13Q8IUC8 556 aa11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 DCUN1D3Q8IWE4 304 aa11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 CHCHD4Q8N4Q1 142 aa11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 ENDOVQ8N8Q3 282 aaKnown RBP11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 ZNF740Q8NDX6 193 aa11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 HIPK4Q8NE63 616 aa11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 OR5K2Q8NHB8 316 aa11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 RLN3Q8WXF3 142 aa11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 TSACCQ96A04 125 aaPredicted RBP11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 TIMM29Q9BSF4 260 aa11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 ACAT2Q9BWD1 397 aa11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 C1QTNF7Q9BXJ2 289 aa11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 XKR8Q9H6D3 395 aa11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 C1orf109Q9NX04 203 aa11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 NOP53Q9NZM5 478 aaKnown RBP11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 PRPF19Q9UMS4 504 aaKnown RBP11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 SNX6Q9UNH7 406 aa11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 NEUROG3Q9Y4Z2 214 aa11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 PCM1Q15154 2024 aa11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 A0A1W2PPV9 198 aa11.86□□□□□ -0.51
AP003559.1-201ENST00000540906 SEMA4FO95754 770 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms