RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-208	ENST00000536710	GMPS	P49915	693 aa	Predicted RBP	4.99	□□□□□ -1.61
PRKDC-208	ENST00000536710	MFAP3	P55082	362 aa		4.99	□□□□□ -1.61
PRKDC-208	ENST00000536710	PPP2R5C	Q13362	524 aa		4.99	□□□□□ -1.61
PRKDC-208	ENST00000536710	TAF13	Q15543	124 aa		4.99	□□□□□ -1.61
PRKDC-208	ENST00000536710	SPOUT1	Q5T280	376 aa	Known RBP	4.99	□□□□□ -1.61
PRKDC-208	ENST00000536710	TXNRD3NB	Q6F5E7	133 aa		4.99	□□□□□ -1.61
PRKDC-208	ENST00000536710	CYB5D1	Q6P9G0	228 aa		4.99	□□□□□ -1.61
PRKDC-208	ENST00000536710	NDUFAF2	Q8N183	169 aa		4.99	□□□□□ -1.61
PRKDC-208	ENST00000536710	C10orf53	Q8N6V4	93 aa		4.99	□□□□□ -1.61
PRKDC-208	ENST00000536710	GPATCH11	Q8N954	259 aa		4.99	□□□□□ -1.61
PRKDC-208	ENST00000536710		Q8N9P0	234 aa	Predicted RBP	4.99	□□□□□ -1.61
PRKDC-208	ENST00000536710	NOA1	Q8NC60	698 aa	Known RBP	4.99	□□□□□ -1.61
PRKDC-208	ENST00000536710	GRHL3	Q8TE85	626 aa		4.99	□□□□□ -1.61
PRKDC-208	ENST00000536710	HSD17B8	Q92506	261 aa		4.99	□□□□□ -1.61
PRKDC-208	ENST00000536710	TEKT1	Q969V4	418 aa		4.99	□□□□□ -1.61
PRKDC-208	ENST00000536710	SLC47A1	Q96FL8	570 aa		4.99	□□□□□ -1.61
PRKDC-208	ENST00000536710	BICC1	Q9H694	974 aa	Known RBP	4.99	□□□□□ -1.61
PRKDC-208	ENST00000536710	TMEM206	Q9H813	350 aa		4.99	□□□□□ -1.61
PRKDC-208	ENST00000536710		Q9H8V8	135 aa		4.99	□□□□□ -1.61
PRKDC-208	ENST00000536710	TUFT1	Q9NNX1	390 aa		4.99	□□□□□ -1.61
PRKDC-208	ENST00000536710	FAM118A	Q9NWS6	357 aa		4.99	□□□□□ -1.61
PRKDC-208	ENST00000536710	GMEB2	Q9UKD1	530 aa		4.99	□□□□□ -1.61
PRKDC-208	ENST00000536710	LIPT1	Q9Y234	373 aa		4.99	□□□□□ -1.61
PRKDC-208	ENST00000536710	RIPK3	Q9Y572	518 aa		4.99	□□□□□ -1.61
PRKDC-208	ENST00000536710	TRIM17	Q9Y577	477 aa		4.99	□□□□□ -1.61
PRKDC-208	ENST00000536710	TRIM64	A6NGJ6	449 aa		4.98	□□□□□ -1.61
PRKDC-208	ENST00000536710	CASTOR2	A6NHX0	329 aa		4.98	□□□□□ -1.61
PRKDC-208	ENST00000536710	TRIM64B	A6NI03	449 aa		4.98	□□□□□ -1.61
PRKDC-208	ENST00000536710	SLC30A4	O14863	429 aa		4.98	□□□□□ -1.61
PRKDC-208	ENST00000536710	PRAF2	O60831	178 aa		4.98	□□□□□ -1.61
PRKDC-208	ENST00000536710	PRKRA	O75569	313 aa	Known RBP	4.98	□□□□□ -1.61
PRKDC-208	ENST00000536710	GOSR1	O95249	250 aa		4.98	□□□□□ -1.61
PRKDC-208	ENST00000536710	PLG	P00747	810 aa	Predicted RBP	4.98	□□□□□ -1.61
PRKDC-208	ENST00000536710	NR1D1	P20393	614 aa		4.98	□□□□□ -1.61
PRKDC-208	ENST00000536710	RPL21	P46778	160 aa	Known RBP	4.98	□□□□□ -1.61
PRKDC-208	ENST00000536710	KLC1	Q07866	573 aa		4.98	□□□□□ -1.61
PRKDC-208	ENST00000536710	TAF10	Q12962	218 aa		4.98	□□□□□ -1.61
PRKDC-208	ENST00000536710	GLRA4	Q5JXX5	417 aa		4.98	□□□□□ -1.61
PRKDC-208	ENST00000536710	CAPRIN2	Q6IMN6	1127 aa	Known RBP	4.98	□□□□□ -1.61
PRKDC-208	ENST00000536710	GDPD4	Q6W3E5	623 aa		4.98	□□□□□ -1.61
PRKDC-208	ENST00000536710	C9orf139	Q6ZV77	190 aa		4.98	□□□□□ -1.61
PRKDC-208	ENST00000536710	NFE4	Q86UQ8	179 aa		4.98	□□□□□ -1.61
PRKDC-208	ENST00000536710	PHLDA1	Q8WV24	401 aa	Predicted RBP	4.98	□□□□□ -1.61
PRKDC-208	ENST00000536710	TMEM143	Q96AN5	459 aa		4.98	□□□□□ -1.61
PRKDC-208	ENST00000536710	PYCR2	Q96C36	320 aa		4.98	□□□□□ -1.61
PRKDC-208	ENST00000536710	PGM2	Q96G03	612 aa		4.98	□□□□□ -1.61
PRKDC-208	ENST00000536710	CCDC43	Q96MW1	224 aa	Known RBP	4.98	□□□□□ -1.61
PRKDC-208	ENST00000536710	HNRNPAB	Q99729	332 aa	Known RBP	4.98	□□□□□ -1.61
PRKDC-208	ENST00000536710	ZMYND12	Q9H0C1	365 aa		4.98	□□□□□ -1.61
PRKDC-208	ENST00000536710	RAB9B	Q9NP90	201 aa		4.98	□□□□□ -1.61
PRKDC-208	ENST00000536710	STUB1	Q9UNE7	303 aa		4.98	□□□□□ -1.61
PRKDC-208	ENST00000536710	TNFSF12-TNFSF13	A0A0A6YY99	330 aa		4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	LOC101059948	A0A1B0GTJ6	334 aa		4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710		A0A1W2PN81	502 aa		4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	LRRD1	A4D1F6	860 aa		4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	FLRT2	O43155	660 aa		4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	XPNPEP2	O43895	674 aa		4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	CRCP	O75575	148 aa		4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	CRYAA	P02489	173 aa		4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	TGFB3	P10600	412 aa		4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	ITIH1	P19827	911 aa		4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	CA4	P22748	312 aa		4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	CD27	P26842	260 aa		4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	CHRNA7	P36544	502 aa		4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	ALDH3A2	P51648	485 aa		4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	FOLH1	Q04609	750 aa		4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	RASGEF1B	Q0VAM2	473 aa		4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	NOTUM	Q6P988	496 aa		4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	SLC27A1	Q6PCB7	646 aa		4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	C15orf39	Q6ZRI6	1047 aa		4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	RAPH1	Q70E73	1250 aa		4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	CROCCP3	Q8IVE0	287 aa		4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	APCDD1	Q8J025	514 aa		4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	CCDC63	Q8NA47	563 aa		4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	SPC24	Q8NBT2	197 aa		4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	OR7G3	Q8NG95	312 aa		4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	MGARP	Q8TDB4	240 aa		4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	PTP4A1	Q93096	173 aa		4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	ALG14	Q96F25	216 aa		4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	AK8	Q96MA6	479 aa		4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	CCDC3	Q9BQI4	270 aa		4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	LAT2	Q9GZY6	243 aa		4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	LSG1	Q9H089	658 aa	Known RBP	4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	FGF21	Q9NSA1	209 aa		4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	FAM207A	Q9NSI2	230 aa	Predicted RBP	4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	DONSON	Q9NYP3	566 aa		4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	PKD2L2	Q9NZM6	624 aa		4.97	□□□□□ -1.61
PRKDC-208	ENST00000536710	PCSK5	Q92824	1860 aa		4.96	□□□□□ -1.61
PRKDC-208	ENST00000536710	C2orf81	A6NN90	581 aa		4.96	□□□□□ -1.62
PRKDC-208	ENST00000536710	CTDSPL	O15194	276 aa		4.96	□□□□□ -1.62
PRKDC-208	ENST00000536710	PRKN	O60260	465 aa	Predicted RBP	4.96	□□□□□ -1.62
PRKDC-208	ENST00000536710	C9	P02748	559 aa		4.96	□□□□□ -1.62
PRKDC-208	ENST00000536710	SERPING1	P05155	500 aa		4.96	□□□□□ -1.62
PRKDC-208	ENST00000536710	CCND3	P30281	292 aa	Predicted RBP	4.96	□□□□□ -1.62
PRKDC-208	ENST00000536710	TIA1	P31483	386 aa	Known RBP eCLIP	4.96	□□□□□ -1.62
PRKDC-208	ENST00000536710	CSTF2	P33240	577 aa	Known RBP eCLIP	4.96	□□□□□ -1.62
PRKDC-208	ENST00000536710	HNF4A	P41235	474 aa		4.96	□□□□□ -1.62
PRKDC-208	ENST00000536710	VAMP7	P51809	220 aa		4.96	□□□□□ -1.62
PRKDC-208	ENST00000536710	B3GALT5-AS1	P59052	145 aa		4.96	□□□□□ -1.62
PRKDC-208	ENST00000536710	ST8SIA6	P61647	398 aa		4.96	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms