RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	CCDC187	A0A096LP49	1063 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	TYW5	A2RUC4	315 aa	Known RBP	4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	SH2D7	A6NKC9	451 aa	Predicted RBP	4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	MARCH11	A6NNE9	402 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981		F5H5T6	163 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	PRAMEF26	H0Y7S4	382 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981		K7EM74	188 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981		K7ERQ8	282 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	AP3D1	O14617	1153 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	LDLRAD4	O15165	306 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	CETN3	O15182	167 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	PPM1D	O15297	605 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	RAD51B	O15315	384 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	HNRNPR	O43390	633 aa	Known RBP	4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	RNASEH1	O60930	286 aa	Known RBP	4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	PPFIA2	O75334	1257 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	ZNF821	O75541	412 aa	Predicted RBP	4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	ZNF202	O95125	648 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	TRUB2	O95900	331 aa	Known RBP	4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	IL1B	P01584	269 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	APOE	P02649	317 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	PRKCG	P05129	697 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	GP1BA	P07359	652 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	KRT7	P08729	469 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	SRC	P12931	536 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	JUNB	P17275	347 aa	Predicted RBP	4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	DGKA	P23743	735 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	GATA3	P23771	443 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	MAT2A	P31153	395 aa	Known RBP	4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	NUDT1	P36639	197 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	PAFAH1B1	P43034	410 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	GSTM5	P46439	218 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	DUSP3	P51452	185 aa	Predicted RBP	4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	RNASE9	P60153	205 aa	Known RBP	4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	FKBP3	Q00688	224 aa	Known RBP	4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	MC1R	Q01726	317 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	MAMLD1	Q13495	774 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	TUBB3	Q13509	450 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	DCTN2	Q13561	401 aa	Known RBP	4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	FZD2	Q14332	565 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	ISX	Q2M1V0	245 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	PTPN20	Q4JDL3	420 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	SETMAR	Q53H47	684 aa	Predicted RBP	4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	ZNF766	Q5HY98	468 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	ZNF569	Q5MCW4	686 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	ZNF648	Q5T619	568 aa	Predicted RBP	4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	MFSD4B	Q5TF39	518 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	SEL1L3	Q68CR1	1132 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	CAPRIN2	Q6IMN6	1127 aa	Known RBP	4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	TRNP1	Q6NT89	227 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	FBXL22	Q6P050	247 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	GUSBP11	Q6P575	273 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	FAM183BP	Q6ZVS7	135 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	MICALCL	Q6ZW33	695 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	PARS2	Q7L3T8	475 aa	Known RBP	4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	KRT74	Q7RTS7	529 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	BNIPL	Q7Z465	357 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	CLNK	Q7Z7G1	428 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	TMEM110	Q86TL2	294 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	TAX1BP1	Q86VP1	789 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	OR2A12	Q8NGT7	310 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	ZCCHC10	Q8TBK6	192 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	GANC	Q8TET4	914 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	SSC4D	Q8WTU2	575 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	OR8D1	Q8WZ84	308 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	SHC3	Q92529	594 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	CCDC47	Q96A33	483 aa	Known RBP	4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	FAM149B1	Q96BN6	582 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	CTHRC1	Q96CG8	243 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	FAM120B	Q96EK7	910 aa	Known RBP	4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	RNFT2	Q96EX2	444 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	GNRHR2	Q96P88	292 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	GSDMA	Q96QA5	445 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	LMF1	Q96S06	567 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	CPXM1	Q96SM3	734 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	KLF6	Q99612	283 aa	Predicted RBP	4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	NPAS1	Q99742	590 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	OMD	Q99983	421 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	DDX50	Q9BQ39	737 aa	Known RBP	4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	TRIM62	Q9BVG3	475 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	POPDC2	Q9HBU9	364 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	EIF2B3	Q9NR50	452 aa	Known RBP	4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	PCDHB16	Q9NRJ7	776 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	THSD1	Q9NS62	852 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	SLC22A11	Q9NSA0	550 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	PIGV	Q9NUD9	493 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	BEX4	Q9NWD9	120 aa	Predicted RBP	4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	DDIT4	Q9NX09	232 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	NLGN3	Q9NZ94	848 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	SUN2	Q9UH99	717 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	STEAP1	Q9UHE8	339 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	KCNE5	Q9UJ90	142 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	MAN1B1	Q9UKM7	699 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	BAG5	Q9UL15	447 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	KIAA1257	Q9ULG3	409 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	NCKAP1	Q9Y2A7	1128 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	UBE2J1	Q9Y385	318 aa	Predicted RBP	4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	ENTPD2	Q9Y5L3	495 aa		4.23	□□□□□ -1.73
VPS52-222	ENST00000495981	MED13L	Q71F56	2210 aa		4.23	□□□□□ -1.73

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