RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 RTTNQ86VV8 2226 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 GRM6O15303 877 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 SCGB2A1O75556 95 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 UPP2O95045 317 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 IFNA17P01571 189 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 ALPPP05187 535 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 H1F0P07305 194 aaKnown RBP13.03□□□□□ -0.32
COL6A3-209ENST00000472056 L1CAMP32004 1257 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 HNRNPFP52597 415 aaKnown RBP13.03□□□□□ -0.32
COL6A3-209ENST00000472056 C2orf80Q0P641 193 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 HGSNATQ68CP4 663 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 KCNS3Q9BQ31 491 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 LPIN3Q9BQK8 851 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 KATNBL1Q9H079 304 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 ST14Q9Y5Y6 855 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 UBR2Q8IWV8 1755 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 ADAMTS3O15072 1205 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 CLCN7P51798 805 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 ZNF132P52740 706 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 MLLT6P55198 1093 aaPredicted RBP13.03□□□□□ -0.32
COL6A3-209ENST00000472056 KCNC4Q03721 635 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 RPA4Q13156 261 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 PDZD9Q8IXQ8 264 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 PEX13Q92968 403 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 ZNHIT2Q9UHR6 403 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 DCCP43146 1447 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 RASAL1O95294 804 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 HK1P19367 917 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 DNAJB13P59910 316 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 PFKPQ01813 784 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 CRY2Q49AN0 593 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 PRPF38BQ5VTL8 546 aaKnown RBP13.03□□□□□ -0.32
COL6A3-209ENST00000472056 CIR1Q86X95 450 aaPredicted RBP13.03□□□□□ -0.32
COL6A3-209ENST00000472056 LSM14AQ8ND56 463 aaKnown RBP13.03□□□□□ -0.32
COL6A3-209ENST00000472056 MAGIXQ9H6Y5 334 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 PREBQ9HCU5 417 aa13.03□□□□□ -0.32
COL6A3-209ENST00000472056 MKKSQ9NPJ1 570 aaPredicted RBP13.03□□□□□ -0.32
COL6A3-209ENST00000472056 PHPT1Q9NRX4 125 aaPredicted RBP13.03□□□□□ -0.32
COL6A3-209ENST00000472056 SPIN1Q9Y657 262 aaPredicted RBP13.03□□□□□ -0.32
COL6A3-209ENST00000472056 MYO7AQ13402 2215 aa13.02□□□□□ -0.32
COL6A3-209ENST00000472056 A0A1W2PPM1 405 aa13.02□□□□□ -0.32
COL6A3-209ENST00000472056 WASHC1A8K0Z3 465 aa13.02□□□□□ -0.32
COL6A3-209ENST00000472056 WASH3PC4AMC7 463 aa13.02□□□□□ -0.32
COL6A3-209ENST00000472056 PPATQ06203 517 aa13.02□□□□□ -0.32
COL6A3-209ENST00000472056 GTF2IRD2BQ6EKJ0 949 aa13.02□□□□□ -0.32
COL6A3-209ENST00000472056 SLC30A6Q6NXT4 461 aa13.02□□□□□ -0.32
COL6A3-209ENST00000472056 WASH2PQ6VEQ5 465 aa13.02□□□□□ -0.32
COL6A3-209ENST00000472056 GTF2IRD2Q86UP8 949 aa13.02□□□□□ -0.32
COL6A3-209ENST00000472056 WDSUB1Q8N9V3 476 aa13.02□□□□□ -0.32
COL6A3-209ENST00000472056 PIH1D1Q9NWS0 290 aaKnown RBP13.02□□□□□ -0.32
COL6A3-209ENST00000472056 TRPM6Q9BX84 2022 aa13.02□□□□□ -0.32
COL6A3-209ENST00000472056 ERAL1O75616 437 aaKnown RBP13.02□□□□□ -0.32
COL6A3-209ENST00000472056 NFE2L1Q14494 772 aa13.02□□□□□ -0.32
COL6A3-209ENST00000472056 OR10G2Q8NGC3 310 aa13.02□□□□□ -0.32
COL6A3-209ENST00000472056 PYURFQ96I23 114 aa13.02□□□□□ -0.32
COL6A3-209ENST00000472056 MAELQ96JY0 434 aaKnown RBP13.02□□□□□ -0.32
COL6A3-209ENST00000472056 OR52B2Q96RD2 323 aa13.02□□□□□ -0.32
COL6A3-209ENST00000472056 CD180Q99467 661 aa13.02□□□□□ -0.32
COL6A3-209ENST00000472056 CNTN3Q9P232 1028 aa13.02□□□□□ -0.32
COL6A3-209ENST00000472056 NOP16Q9Y3C1 178 aaKnown RBP13.02□□□□□ -0.32
COL6A3-209ENST00000472056 MATN3O15232 486 aa13.02□□□□□ -0.33
COL6A3-209ENST00000472056 PSMD10O75832 226 aa13.02□□□□□ -0.33
COL6A3-209ENST00000472056 ATG12O94817 140 aa13.02□□□□□ -0.33
COL6A3-209ENST00000472056 FASTKD3Q14CZ7 662 aaKnown RBP13.02□□□□□ -0.33
COL6A3-209ENST00000472056 ALG10BQ5I7T1 473 aa13.02□□□□□ -0.33
COL6A3-209ENST00000472056 RALGPS2Q86X27 583 aaPredicted RBP13.02□□□□□ -0.33
COL6A3-209ENST00000472056 RBM18Q96H35 190 aaKnown RBP13.02□□□□□ -0.33
COL6A3-209ENST00000472056 APOLD1Q96LR9 279 aa13.02□□□□□ -0.33
COL6A3-209ENST00000472056 IDI2Q9BXS1 227 aa13.02□□□□□ -0.33
COL6A3-209ENST00000472056 PCDHB9Q9Y5E1 797 aa13.02□□□□□ -0.33
COL6A3-209ENST00000472056 HSBP1L1C9JCN9 74 aa13.02□□□□□ -0.33
COL6A3-209ENST00000472056 IFNA10P01566 189 aa13.02□□□□□ -0.33
COL6A3-209ENST00000472056 ACTBP60709 375 aa13.02□□□□□ -0.33
COL6A3-209ENST00000472056 ACTG1P63261 375 aa13.02□□□□□ -0.33
COL6A3-209ENST00000472056 HSDL1Q3SXM5 330 aa13.02□□□□□ -0.33
COL6A3-209ENST00000472056 SLC39A12Q504Y0 691 aa13.02□□□□□ -0.33
COL6A3-209ENST00000472056 C3orf67Q6ZVT6 689 aa13.02□□□□□ -0.33
COL6A3-209ENST00000472056 CMC1Q7Z7K0 106 aa13.02□□□□□ -0.33
COL6A3-209ENST00000472056 COL20A1Q9P218 1284 aa13.02□□□□□ -0.33
COL6A3-209ENST00000472056 A0A0G2JMP0 313 aa13.02□□□□□ -0.33
COL6A3-209ENST00000472056 OR2B3O76000 313 aa13.02□□□□□ -0.33
COL6A3-209ENST00000472056 TLE3Q04726 772 aa13.02□□□□□ -0.33
COL6A3-209ENST00000472056 FAM198BQ6UWH4 519 aa13.02□□□□□ -0.33
COL6A3-209ENST00000472056 GDPD1Q8N9F7 314 aa13.02□□□□□ -0.33
COL6A3-209ENST00000472056 OR4M2Q8NGB6 313 aa13.02□□□□□ -0.33
COL6A3-209ENST00000472056 TBC1D15Q8TC07 691 aa13.02□□□□□ -0.33
COL6A3-209ENST00000472056 XAGE5Q8WWM1 108 aa13.02□□□□□ -0.33
COL6A3-209ENST00000472056 PNPLA2Q96AD5 504 aa13.02□□□□□ -0.33
COL6A3-209ENST00000472056 OR5B12Q96R08 314 aa13.02□□□□□ -0.33
COL6A3-209ENST00000472056 NT5C1B-RDH14C9J2C7 533 aa13.02□□□□□ -0.33
COL6A3-209ENST00000472056 ZNF286BP0CG31 522 aa13.02□□□□□ -0.33
COL6A3-209ENST00000472056 RPS14P62263 151 aaKnown RBP13.02□□□□□ -0.33
COL6A3-209ENST00000472056 GRIK2Q13002 908 aa13.02□□□□□ -0.33
COL6A3-209ENST00000472056 COQ5Q5HYK3 327 aa13.02□□□□□ -0.33
COL6A3-209ENST00000472056 FBXO16Q8IX29 292 aaPredicted RBP13.02□□□□□ -0.33
COL6A3-209ENST00000472056 OR8J3Q8NGG0 315 aa13.02□□□□□ -0.33
COL6A3-209ENST00000472056 SLC16A10Q8TF71 515 aa13.02□□□□□ -0.33
COL6A3-209ENST00000472056 MAP4K5Q9Y4K4 846 aa13.02□□□□□ -0.33
COL6A3-209ENST00000472056 CKAP5Q14008 2032 aa13.01□□□□□ -0.33
COL6A3-209ENST00000472056 MAFO75444 373 aaPredicted RBP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms