RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 ERVFC1P60507 584 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 NEDD8Q15843 81 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 NOXRED1Q6NXP6 359 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 DOK6Q6PKX4 331 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 SPESP1Q6UW49 350 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 GPR180Q86V85 440 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 GPR65Q8IYL9 337 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 LILRA3Q8N6C8 439 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-217ENST00000466159 OR52E4Q8NGH9 312 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 SDCCAG3Q96C92 435 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 DCUN1D5Q9BTE7 237 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 RIOK2Q9BVS4 552 aaKnown RBP8.69□□□□□ -1.02
SYNE1-217ENST00000466159 OSBPL10Q9BXB5 764 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 OSBPL6Q9BZF3 934 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 AMBRA1Q9C0C7 1298 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 RMND5AQ9H871 391 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 PCDH12Q9NPG4 1184 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 SPHK2Q9NRA0 654 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 TDP1Q9NUW8 608 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 FAM118AQ9NWS6 357 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 PTPRSQ13332 1948 aa8.69□□□□□ -1.02
SYNE1-217ENST00000466159 TRIM43BA6NCK2 446 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 WASH3PC4AMC7 463 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 PER2O15055 1255 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 CTSLP07711 333 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 PRPH2P23942 346 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 EEF1B2P24534 225 aaKnown RBP8.68□□□□□ -1.02
SYNE1-217ENST00000466159 VIPR1P32241 457 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 AP1S2P56377 157 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 PPP2R2BQ00005 443 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 IRF8Q02556 426 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 VAC14Q08AM6 782 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 SP140Q13342 867 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 DDX39BQ13838 428 aaKnown RBP8.68□□□□□ -1.02
SYNE1-217ENST00000466159 CCSMST1Q4G0I0 132 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 EEF1AKMT2Q5JPI9 291 aaKnown RBP8.68□□□□□ -1.02
SYNE1-217ENST00000466159 GPR107Q5VW38 600 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 CES5AQ6NT32 575 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 BRAT1Q6PJG6 821 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 ZNF366Q8N895 744 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 OR7A2PQ8NGA2 310 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 ASZ1Q8WWH4 475 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 SGCDQ92629 289 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 TRIM43Q96BQ3 446 aaPredicted RBP8.68□□□□□ -1.02
SYNE1-217ENST00000466159 TESCQ96BS2 214 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 MBOAT4Q96T53 435 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 MTERF1Q99551 399 aaKnown RBP8.68□□□□□ -1.02
SYNE1-217ENST00000466159 TCF25Q9BQ70 676 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 HEPHQ9BQS7 1158 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 NAA50Q9GZZ1 169 aaKnown RBP8.68□□□□□ -1.02
SYNE1-217ENST00000466159 ING2Q9H160 280 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 TIMMDC1Q9NPL8 285 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 ERVW-1Q9UQF0 538 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 ERVK-11Q9UQG0 969 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 PCDHGA8Q9Y5G5 932 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 ARHGEF33A8MVX0 844 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 CFAP99D6REC4 459 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 SLC16A5O15375 505 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 SH3BGRLO75368 114 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 SLCO2B1O94956 709 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 ATE1O95260 518 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 CYP2A6P11509 494 aaPredicted RBP8.68□□□□□ -1.02
SYNE1-217ENST00000466159 JUPP14923 745 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 TIMP2P16035 220 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 IL7RP16871 459 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 ZNF30P17039 623 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 PREPP48147 710 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 CTSCP53634 463 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 SPIDRQ14159 915 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 XKR6Q5GH73 641 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 C1orf53Q5VUE5 145 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 ADNP2Q6IQ32 1131 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 THAP5Q7Z6K1 395 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 DNAJB8Q8NHS0 232 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 FRS2Q8WU20 508 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 GAB3Q8WWW8 586 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 HHIPQ96QV1 700 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 YTHDF1Q9BYJ9 559 aaKnown RBP8.68□□□□□ -1.02
SYNE1-217ENST00000466159 REXO4Q9GZR2 422 aaKnown RBP8.68□□□□□ -1.02
SYNE1-217ENST00000466159 ADNPQ9H2P0 1102 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 THG1LQ9NWX6 298 aaKnown RBP8.68□□□□□ -1.02
SYNE1-217ENST00000466159 ATXN10Q9UBB4 475 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 AP3M1Q9Y2T2 418 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 TMED5Q9Y3A6 229 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 WNT6Q9Y6F9 365 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 NOTCH4Q99466 2003 aa8.68□□□□□ -1.02
SYNE1-217ENST00000466159 A0A1W2PQ67 120 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 E7EQ34 232 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 WNT9AO14904 365 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 KPNA5O15131 536 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 TSPAN6O43657 245 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 HS6ST1O60243 411 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 E2F6O75461 281 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 HPRP00739 348 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 TIMP1P01033 207 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 PFKLP17858 780 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 POLR2EP19388 210 aaKnown RBP8.67□□□□□ -1.02
SYNE1-217ENST00000466159 EFNA1P20827 205 aaPredicted RBP8.67□□□□□ -1.02
SYNE1-217ENST00000466159 MAPK1P28482 360 aa8.67□□□□□ -1.02
SYNE1-217ENST00000466159 DCTP40126 519 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms