RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 CASRP41180 1078 aa17.11■□□□□ 0.33
COL7A1-205ENST00000465238 BDKRB1P46663 353 aa17.11■□□□□ 0.33
COL7A1-205ENST00000465238 TAS2R39P59534 338 aa17.11■□□□□ 0.33
COL7A1-205ENST00000465238 USP10Q14694 798 aaKnown RBP17.11■□□□□ 0.33
COL7A1-205ENST00000465238 EFTUD2Q15029 972 aaKnown RBP eCLIP17.11■□□□□ 0.33
COL7A1-205ENST00000465238 UAP1Q16222 522 aaPredicted RBP17.11■□□□□ 0.33
COL7A1-205ENST00000465238 UBAP2Q5T6F2 1119 aaKnown RBP17.11■□□□□ 0.33
COL7A1-205ENST00000465238 ATP1A1-AS1Q5TC04 95 aa17.11■□□□□ 0.33
COL7A1-205ENST00000465238 CYHR1Q6ZMK1 362 aa17.11■□□□□ 0.33
COL7A1-205ENST00000465238 PIWIL4Q7Z3Z4 852 aaKnown RBP17.11■□□□□ 0.33
COL7A1-205ENST00000465238 BPHLQ86WA6 291 aaPredicted RBP17.11■□□□□ 0.33
COL7A1-205ENST00000465238 SPNS2Q8IVW8 549 aa17.11■□□□□ 0.33
COL7A1-205ENST00000465238 MYO1HQ8N1T3 1032 aa17.11■□□□□ 0.33
COL7A1-205ENST00000465238 UHMK1Q8TAS1 419 aaKnown RBP17.11■□□□□ 0.33
COL7A1-205ENST00000465238 TSPAN17Q96FV3 270 aa17.11■□□□□ 0.33
COL7A1-205ENST00000465238 ABHD17AQ96GS6 310 aa17.11■□□□□ 0.33
COL7A1-205ENST00000465238 FCRL4Q96PJ5 515 aa17.11■□□□□ 0.33
COL7A1-205ENST00000465238 CD180Q99467 661 aa17.11■□□□□ 0.33
COL7A1-205ENST00000465238 FUT8Q9BYC5 575 aa17.11■□□□□ 0.33
COL7A1-205ENST00000465238 SYTL2Q9HCH5 934 aa17.11■□□□□ 0.33
COL7A1-205ENST00000465238 ZNF71Q9NQZ8 489 aaPredicted RBP17.11■□□□□ 0.33
COL7A1-205ENST00000465238 PADI1Q9ULC6 663 aa17.11■□□□□ 0.33
COL7A1-205ENST00000465238 ICKQ9UPZ9 632 aa17.11■□□□□ 0.33
COL7A1-205ENST00000465238 KCNMB2Q9Y691 235 aa17.11■□□□□ 0.33
COL7A1-205ENST00000465238 IGHV5-51A0A0C4DH38 117 aa17.1■□□□□ 0.33
COL7A1-205ENST00000465238 GSAPA4D1B5 854 aa17.1■□□□□ 0.33
COL7A1-205ENST00000465238 ZBTB14O43829 449 aa17.1■□□□□ 0.33
COL7A1-205ENST00000465238 PSIP1O75475 530 aaKnown RBP17.1■□□□□ 0.33
COL7A1-205ENST00000465238 FAM155BO75949 473 aa17.1■□□□□ 0.33
COL7A1-205ENST00000465238 RECKO95980 971 aa17.1■□□□□ 0.33
COL7A1-205ENST00000465238 TPBGLP0DKB5 382 aa17.1■□□□□ 0.33
COL7A1-205ENST00000465238 MYBL2P10244 700 aa17.1■□□□□ 0.33
COL7A1-205ENST00000465238 RAB28P51157 221 aa17.1■□□□□ 0.33
COL7A1-205ENST00000465238 PPP1CAP62136 330 aa17.1■□□□□ 0.33
COL7A1-205ENST00000465238 TUBB3Q13509 450 aa17.1■□□□□ 0.33
COL7A1-205ENST00000465238 KMT5CQ86Y97 462 aa17.1■□□□□ 0.33
COL7A1-205ENST00000465238 NKAPQ8N5F7 415 aaKnown RBP17.1■□□□□ 0.33
COL7A1-205ENST00000465238 ASB11Q8WXH4 323 aa17.1■□□□□ 0.33
COL7A1-205ENST00000465238 RNF31Q96EP0 1072 aa17.1■□□□□ 0.33
COL7A1-205ENST00000465238 LINGO1Q96FE5 620 aa17.1■□□□□ 0.33
COL7A1-205ENST00000465238 GPR22Q99680 433 aa17.1■□□□□ 0.33
COL7A1-205ENST00000465238 EPN3Q9H201 632 aa17.1■□□□□ 0.33
COL7A1-205ENST00000465238 POPDC3Q9HBV1 291 aa17.1■□□□□ 0.33
COL7A1-205ENST00000465238 OR6C2Q9NZP2 312 aa17.1■□□□□ 0.33
COL7A1-205ENST00000465238 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.1■□□□□ 0.33
COL7A1-205ENST00000465238 CIDEBQ9UHD4 219 aa17.1■□□□□ 0.33
COL7A1-205ENST00000465238 RARRES3Q9UL19 164 aa17.1■□□□□ 0.33
COL7A1-205ENST00000465238 POLHQ9Y253 713 aa17.1■□□□□ 0.33
COL7A1-205ENST00000465238 PCDHGA6Q9Y5G7 932 aa17.1■□□□□ 0.33
COL7A1-205ENST00000465238 IKBKGQ9Y6K9 419 aa17.1■□□□□ 0.33
COL7A1-205ENST00000465238 V9GYY5 206 aaPredicted RBP17.1■□□□□ 0.33
COL7A1-205ENST00000465238 LRRK2Q5S007 2527 aa17.1■□□□□ 0.33
COL7A1-205ENST00000465238 ANKRD12Q6UB98 2062 aa17.09■□□□□ 0.33
COL7A1-205ENST00000465238 TLCD2A6NGC4 264 aa17.09■□□□□ 0.33
COL7A1-205ENST00000465238 C2orf74A8MZ97 194 aa17.09■□□□□ 0.33
COL7A1-205ENST00000465238 BTN3A3O00478 584 aa17.09■□□□□ 0.33
COL7A1-205ENST00000465238 BTN3A1O00481 513 aa17.09■□□□□ 0.33
COL7A1-205ENST00000465238 KATNA1O75449 491 aa17.09■□□□□ 0.33
COL7A1-205ENST00000465238 STMN1P16949 149 aa17.09■□□□□ 0.33
COL7A1-205ENST00000465238 ARL4DP49703 201 aa17.09■□□□□ 0.33
COL7A1-205ENST00000465238 PGGT1BP53609 377 aa17.09■□□□□ 0.33
COL7A1-205ENST00000465238 ACY1Q03154 408 aa17.09■□□□□ 0.33
COL7A1-205ENST00000465238 ERV3-1Q14264 604 aa17.09■□□□□ 0.33
COL7A1-205ENST00000465238 GRB7Q14451 532 aa17.09■□□□□ 0.33
COL7A1-205ENST00000465238 LACTB2Q53H82 288 aaPredicted RBP17.09■□□□□ 0.33
COL7A1-205ENST00000465238 UBE2R2Q712K3 238 aaPredicted RBP17.09■□□□□ 0.33
COL7A1-205ENST00000465238 ADGRF3Q8IZF5 1079 aa17.09■□□□□ 0.33
COL7A1-205ENST00000465238 NRTNQ99748 197 aa17.09■□□□□ 0.33
COL7A1-205ENST00000465238 RAB11FIP5Q9BXF6 653 aa17.09■□□□□ 0.33
COL7A1-205ENST00000465238 TXLNGYQ9BZA5 131 aa17.09■□□□□ 0.33
COL7A1-205ENST00000465238 CAB39LQ9H9S4 337 aa17.09■□□□□ 0.33
COL7A1-205ENST00000465238 GPAMQ9HCL2 828 aa17.09■□□□□ 0.33
COL7A1-205ENST00000465238 LHX9Q9NQ69 397 aa17.09■□□□□ 0.33
COL7A1-205ENST00000465238 PIPSLA2A3N6 862 aa17.08■□□□□ 0.32
COL7A1-205ENST00000465238 ARHGEF33A8MVX0 844 aa17.08■□□□□ 0.32
COL7A1-205ENST00000465238 C21orf140B9A014 251 aa17.08■□□□□ 0.32
COL7A1-205ENST00000465238 POC1B-GALNT4F8VUJ3 575 aa17.08■□□□□ 0.32
COL7A1-205ENST00000465238 GFYI3L273 518 aa17.08■□□□□ 0.32
COL7A1-205ENST00000465238 RASGRF2O14827 1237 aa17.08■□□□□ 0.32
COL7A1-205ENST00000465238 RIPK2O43353 540 aa17.08■□□□□ 0.32
COL7A1-205ENST00000465238 CREG1O75629 220 aa17.08■□□□□ 0.32
COL7A1-205ENST00000465238 TIAF1O95411 115 aa17.08■□□□□ 0.32
COL7A1-205ENST00000465238 C8GP07360 202 aa17.08■□□□□ 0.32
COL7A1-205ENST00000465238 INHBAP08476 426 aa17.08■□□□□ 0.32
COL7A1-205ENST00000465238 ABHD2P08910 425 aa17.08■□□□□ 0.32
COL7A1-205ENST00000465238 CHRM5P08912 532 aaPredicted RBP17.08■□□□□ 0.32
COL7A1-205ENST00000465238 FOLR1P15328 257 aa17.08■□□□□ 0.32
COL7A1-205ENST00000465238 PKLRP30613 574 aa17.08■□□□□ 0.32
COL7A1-205ENST00000465238 MSH2P43246 934 aa17.08■□□□□ 0.32
COL7A1-205ENST00000465238 DNASE1L3Q13609 305 aa17.08■□□□□ 0.32
COL7A1-205ENST00000465238 ERCC6LQ2NKX8 1250 aa17.08■□□□□ 0.32
COL7A1-205ENST00000465238 CCSMST1Q4G0I0 132 aa17.08■□□□□ 0.32
COL7A1-205ENST00000465238 CEP97Q8IW35 865 aa17.08■□□□□ 0.32
COL7A1-205ENST00000465238 CARFQ8N187 725 aa17.08■□□□□ 0.32
COL7A1-205ENST00000465238 FBXO15Q8NCQ5 510 aaPredicted RBP17.08■□□□□ 0.32
COL7A1-205ENST00000465238 OR9A1PQ8NGU1 263 aa17.08■□□□□ 0.32
COL7A1-205ENST00000465238 MCOLN3Q8TDD5 553 aa17.08■□□□□ 0.32
COL7A1-205ENST00000465238 COL26A1Q96A83 441 aa17.08■□□□□ 0.32
COL7A1-205ENST00000465238 PDLIM5Q96HC4 596 aaKnown RBP17.08■□□□□ 0.32
COL7A1-205ENST00000465238 IL17FQ96PD4 163 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms