RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 TUBA1AQ71U36 451 aa11.41□□□□□ -0.58
CPSF3-202ENST00000460593 SNX20Q7Z614 316 aa11.41□□□□□ -0.58
CPSF3-202ENST00000460593 OR52J3Q8NH60 311 aa11.41□□□□□ -0.58
CPSF3-202ENST00000460593 TRPM4Q8TD43 1214 aa11.41□□□□□ -0.58
CPSF3-202ENST00000460593 TSSK3Q96PN8 268 aa11.41□□□□□ -0.58
CPSF3-202ENST00000460593 ZBTB18Q99592 522 aa11.41□□□□□ -0.58
CPSF3-202ENST00000460593 SH3GL1Q99961 368 aa11.41□□□□□ -0.58
CPSF3-202ENST00000460593 CLPBQ9H078 707 aa11.41□□□□□ -0.58
CPSF3-202ENST00000460593 NSUN3Q9H649 340 aaKnown RBP11.41□□□□□ -0.58
CPSF3-202ENST00000460593 IPPKQ9H8X2 491 aa11.41□□□□□ -0.58
CPSF3-202ENST00000460593 SYTL2Q9HCH5 934 aa11.41□□□□□ -0.58
CPSF3-202ENST00000460593 PCDHGA6Q9Y5G7 932 aa11.41□□□□□ -0.58
CPSF3-202ENST00000460593 DOCK1Q14185 1865 aa11.41□□□□□ -0.58
CPSF3-202ENST00000460593 TBKBP1A7MCY6 615 aa11.41□□□□□ -0.58
CPSF3-202ENST00000460593 GFRA2O00451 464 aa11.41□□□□□ -0.58
CPSF3-202ENST00000460593 ITGB1P05556 798 aa11.41□□□□□ -0.58
CPSF3-202ENST00000460593 BMP1P13497 986 aa11.41□□□□□ -0.58
CPSF3-202ENST00000460593 SSTR4P31391 388 aa11.41□□□□□ -0.58
CPSF3-202ENST00000460593 RENBPP51606 427 aa11.41□□□□□ -0.58
CPSF3-202ENST00000460593 UGT2B15P54855 530 aa11.41□□□□□ -0.58
CPSF3-202ENST00000460593 MED22Q15528 200 aa11.41□□□□□ -0.58
CPSF3-202ENST00000460593 MANEALQ5VSG8 457 aa11.41□□□□□ -0.58
CPSF3-202ENST00000460593 PDE12Q6L8Q7 609 aaKnown RBP11.41□□□□□ -0.58
CPSF3-202ENST00000460593 PRR23CQ6ZRP0 262 aa11.41□□□□□ -0.58
CPSF3-202ENST00000460593 ABI3BPQ7Z7G0 1075 aa11.41□□□□□ -0.58
CPSF3-202ENST00000460593 SNAPC3Q92966 411 aa11.41□□□□□ -0.58
CPSF3-202ENST00000460593 RNF170Q96K19 258 aa11.41□□□□□ -0.58
CPSF3-202ENST00000460593 APOL5Q9BWW9 433 aa11.41□□□□□ -0.58
CPSF3-202ENST00000460593 ADORA3P0DMS8 318 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 POU2F1P14859 743 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 MXD1Q05195 221 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 CAMK2GQ13555 558 aaPredicted RBP11.4□□□□□ -0.58
CPSF3-202ENST00000460593 KEAP1Q14145 624 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 TSTQ16762 297 aaKnown RBP11.4□□□□□ -0.58
CPSF3-202ENST00000460593 ZC3H12BQ5HYM0 836 aaKnown RBP11.4□□□□□ -0.58
CPSF3-202ENST00000460593 UBXN11Q5T124 520 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 SDE2Q6IQ49 451 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 TUBA3EQ6PEY2 450 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 RAB43Q86YS6 212 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 SLC44A2Q8IWA5 706 aaPredicted RBP11.4□□□□□ -0.58
CPSF3-202ENST00000460593 COQ8BQ96D53 544 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 MYEOVQ96EZ4 313 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 SIGLEC11Q96RL6 698 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 ZNF717Q9BY31 904 aaPredicted RBP11.4□□□□□ -0.58
CPSF3-202ENST00000460593 THUMPD1Q9NXG2 353 aaKnown RBP11.4□□□□□ -0.58
CPSF3-202ENST00000460593 MAT2BQ9NZL9 334 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 LYVE1Q9Y5Y7 322 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 PDCD11Q14690 1871 aaKnown RBP11.4□□□□□ -0.58
CPSF3-202ENST00000460593 OR6C70A6NIJ9 312 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 GOLGA8CPA6NN73 597 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 GPR182O15218 404 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 CAPN5O15484 640 aaPredicted RBP11.4□□□□□ -0.58
CPSF3-202ENST00000460593 TBX18O95935 607 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 PRKACBP22694 351 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 UGT2B10P36537 528 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 NRIP1P48552 1158 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 KRT6CP48668 564 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 ARHGDIAP52565 204 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 NKX3-2P78367 333 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 STARD3Q14849 445 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 CYP27C1Q4G0S4 372 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 MBOAT1Q6ZNC8 495 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 NOXA1Q86UR1 476 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 LRRTM3Q86VH5 581 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 RASAL3Q86YV0 1011 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 LAX1Q8IWV1 398 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 PEX5LQ8IYB4 626 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 UTP15Q8TED0 518 aaKnown RBP11.4□□□□□ -0.58
CPSF3-202ENST00000460593 CNPPD1Q9BV87 410 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 RLIMQ9NVW2 624 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 OSER1Q9NX31 292 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 TRMT6Q9UJA5 497 aaKnown RBP11.4□□□□□ -0.58
CPSF3-202ENST00000460593 DNMT3LQ9UJW3 386 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 DLGAP4Q9Y2H0 992 aa11.4□□□□□ -0.58
CPSF3-202ENST00000460593 A0A1W2PQ09 198 aa11.4□□□□□ -0.59
CPSF3-202ENST00000460593 NBNO60934 754 aa11.4□□□□□ -0.59
CPSF3-202ENST00000460593 OR4Q2P0C623 313 aa11.4□□□□□ -0.59
CPSF3-202ENST00000460593 TACR1P25103 407 aa11.4□□□□□ -0.59
CPSF3-202ENST00000460593 ZNF33AQ06730 810 aa11.4□□□□□ -0.59
CPSF3-202ENST00000460593 GTF2H2Q13888 395 aa11.4□□□□□ -0.59
CPSF3-202ENST00000460593 CTSL3PQ5NE16 218 aa11.4□□□□□ -0.59
CPSF3-202ENST00000460593 TWF2Q6IBS0 349 aaKnown RBP11.4□□□□□ -0.59
CPSF3-202ENST00000460593 GTF2H2CQ6P1K8 395 aa11.4□□□□□ -0.59
CPSF3-202ENST00000460593 MOB2Q70IA6 237 aa11.4□□□□□ -0.59
CPSF3-202ENST00000460593 CCDC190Q86UF4 302 aa11.4□□□□□ -0.59
CPSF3-202ENST00000460593 TSPYL5Q86VY4 417 aaPredicted RBP11.4□□□□□ -0.59
CPSF3-202ENST00000460593 FAM20CQ8IXL6 584 aa11.4□□□□□ -0.59
CPSF3-202ENST00000460593 EFHBQ8N7U6 833 aa11.4□□□□□ -0.59
CPSF3-202ENST00000460593 RMDN1Q96DB5 314 aa11.4□□□□□ -0.59
CPSF3-202ENST00000460593 SMARCD1Q96GM5 515 aa11.4□□□□□ -0.59
CPSF3-202ENST00000460593 ZNF382Q96SR6 550 aa11.4□□□□□ -0.59
CPSF3-202ENST00000460593 SLC30A2Q9BRI3 323 aa11.4□□□□□ -0.59
CPSF3-202ENST00000460593 RBPJLQ9UBG7 517 aa11.4□□□□□ -0.59
CPSF3-202ENST00000460593 RAPGEFL1Q9UHV5 662 aa11.4□□□□□ -0.59
CPSF3-202ENST00000460593 PAPPA2Q9BXP8 1791 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 A0A0B4J293 547 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 EVPLLA8MZ36 301 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 F8W810 466 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 RETP07949 1114 aa11.39□□□□□ -0.59
CPSF3-202ENST00000460593 BRCC3P46736 316 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms