RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 EPHB3P54753 998 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 ABHD18Q0P651 414 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 CDK5R2Q13319 367 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 AQP6Q13520 282 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 GTF2H3Q13889 308 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 BOP1Q14137 746 aaKnown RBP11.48□□□□□ -0.57
CD44-209ENST00000433892 SIM2Q14190 667 aaPredicted RBP11.48□□□□□ -0.57
CD44-209ENST00000433892 PLEKHG6Q3KR16 790 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 LDLRAP1Q5SW96 308 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 PRAMEF9Q5VWM5 478 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 CPZQ66K79 652 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 TPRG1Q6ZUI0 275 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 CYP4Z1Q86W10 505 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 MUL1Q969V5 352 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 SCRN2Q96FV2 425 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 HIST1H2AHQ96KK5 128 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 HIST1H2AJQ99878 128 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 C19orf43Q9BQ61 176 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 H2AFJQ9BTM1 129 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 SLC12A9Q9BXP2 914 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 RAD21L1Q9H4I0 556 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 ABCB8Q9NUT2 735 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 CD84Q9UIB8 345 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 AXIN1O15169 862 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 SLC16A6O15403 523 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 AOC2O75106 756 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 BCAS1O75363 584 aaPredicted RBP11.48□□□□□ -0.57
CD44-209ENST00000433892 MTX2O75431 263 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 OR56A5P0C7T3 313 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 IL1RNP18510 177 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 PCMT1P22061 227 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 AOAHP28039 575 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 GP2P55259 537 aaKnown RBP11.48□□□□□ -0.57
CD44-209ENST00000433892 ZCCHC8Q6NZY4 707 aaKnown RBP11.48□□□□□ -0.57
CD44-209ENST00000433892 SLC16A12Q6ZSM3 486 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 CEP68Q76N32 757 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 LRRC70Q7Z2Q7 622 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 ASB11Q8WXH4 323 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 TESCQ96BS2 214 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 CMTM7Q96FZ5 175 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 LYSMD1Q96S90 227 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 P2RY13Q9BPV8 354 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 ATG10Q9H0Y0 220 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 RIBC2Q9H4K1 309 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 IL21Q9HBE4 155 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 HMX1Q9NP08 348 aaPredicted RBP11.48□□□□□ -0.57
CD44-209ENST00000433892 AASDHPPTQ9NRN7 309 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 TBCCD1Q9NVR7 557 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 THG1LQ9NWX6 298 aaKnown RBP11.48□□□□□ -0.57
CD44-209ENST00000433892 CFAP97Q9P2B7 532 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 INSL5Q9Y5Q6 135 aa11.48□□□□□ -0.57
CD44-209ENST00000433892 MYO1GB0I1T2 1018 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 hCG_2039718K7EN88 272 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 PITPNM1O00562 1244 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 CCNDBP1O95273 360 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 SRCP12931 536 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 AMD1P17707 334 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 HALP42357 657 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 KIR3DL1P43629 444 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 TOP3AQ13472 1001 aaPredicted RBP11.47□□□□□ -0.57
CD44-209ENST00000433892 ATP1A4Q13733 1029 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 NR1D2Q14995 579 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 NOXRED1Q6NXP6 359 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 SHQ1Q6PI26 577 aaKnown RBP11.47□□□□□ -0.57
CD44-209ENST00000433892 SERPINA13PQ6UXR4 307 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 USP45Q70EL2 814 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 TMCO2Q7Z6W1 182 aaPredicted RBP11.47□□□□□ -0.57
CD44-209ENST00000433892 FAM217AQ8IXS0 508 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 PIK3C3Q8NEB9 887 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 OR7A2PQ8NGA2 310 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 COX4I2Q96KJ9 171 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 PANX1Q96RD7 426 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 REXO4Q9GZR2 422 aaKnown RBP11.47□□□□□ -0.57
CD44-209ENST00000433892 KIAA1522Q9P206 1035 aaPredicted RBP11.47□□□□□ -0.57
CD44-209ENST00000433892 LSM7Q9UK45 103 aaKnown RBP11.47□□□□□ -0.57
CD44-209ENST00000433892 TMPRSS11EQ9UL52 423 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 SAMD4AQ9UPU9 718 aaKnown RBP11.47□□□□□ -0.57
CD44-209ENST00000433892 ZNF106Q9H2Y7 1883 aaKnown RBP11.47□□□□□ -0.57
CD44-209ENST00000433892 PABPN1LA6NDY0 278 aaKnown RBP11.47□□□□□ -0.57
CD44-209ENST00000433892 EVPLLA8MZ36 301 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 ANGPTL1O95841 491 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 OLFM2O95897 454 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 C8GP07360 202 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 ITIH1P19827 911 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 GABRR2P28476 465 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 FMO3P31513 532 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 RYKP34925 604 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 MAGEA2P43356 314 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 SLC6A12P48065 614 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 DAPP51397 102 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 SNRPD1P62314 119 aaKnown RBP11.47□□□□□ -0.57
CD44-209ENST00000433892 EMX1Q04741 257 aaPredicted RBP11.47□□□□□ -0.57
CD44-209ENST00000433892 RFX4Q33E94 735 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 GGTA1PQ4G0N0 100 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 CDKL4Q5MAI5 379 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 FRG2Q64ET8 278 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 DCDC5Q6ZRR9 648 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 ZNF621Q6ZSS3 439 aa11.47□□□□□ -0.57
CD44-209ENST00000433892 PIWIL3Q7Z3Z3 882 aaKnown RBP11.47□□□□□ -0.57
CD44-209ENST00000433892 CYP2U1Q7Z449 544 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms