RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 ULK4Q96C45 1275 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 GPR21Q99679 349 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 TAS2R9Q9NYW1 312 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 USP34Q70CQ2 3546 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 TSPAN4O14817 238 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 OAZ2O95190 189 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 CPSF4O95639 269 aaKnown RBP12.64□□□□□ -0.39
PTPRN-202ENST00000409251 EIF2S1P05198 315 aaKnown RBP12.64□□□□□ -0.39
PTPRN-202ENST00000409251 TYMPP19971 482 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 SDHBP21912 280 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 MVKQ03426 396 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 SLAMF1Q13291 335 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 MARC1Q5VT66 337 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 ZNF517Q6ZMY9 492 aaPredicted RBP12.64□□□□□ -0.39
PTPRN-202ENST00000409251 SYVN1Q86TM6 617 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 ZDHHC21Q8IVQ6 265 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 TMEM199Q8N511 208 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 ARL14EPQ8N8R7 260 aaPredicted RBP12.64□□□□□ -0.39
PTPRN-202ENST00000409251 OR5H6Q8NGV6 325 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 VANGL1Q8TAA9 524 aaPredicted RBP12.64□□□□□ -0.39
PTPRN-202ENST00000409251 TMEM203Q969S6 136 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 MBOAT4Q96T53 435 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 SEMA3CQ99985 751 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 DPY30Q9C005 99 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 IKZF5Q9H5V7 419 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 SDR39U1Q9NRG7 319 aaPredicted RBP12.64□□□□□ -0.39
PTPRN-202ENST00000409251 DNAJB9Q9UBS3 223 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 SATB2Q9UPW6 733 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 PCDHGA10Q9Y5H3 936 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 ASPDHA6ND91 283 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 MTSS1O43312 755 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 MAFKO60675 156 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 RAMP2O60895 175 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 SNX4O95219 450 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 UQCRC1P31930 480 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 GKP32189 559 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 DCTP40126 519 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 LCP2Q13094 533 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 SEMA3BQ13214 749 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 PTPRNQ16849 979 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 ZRANB3Q5FWF4 1079 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 CARNMT1Q8N4J0 409 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 NATD1Q8N6N6 113 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 BEND7Q8N7W2 519 aaPredicted RBP12.64□□□□□ -0.39
PTPRN-202ENST00000409251 C2CD4AQ8NCU7 369 aaPredicted RBP12.64□□□□□ -0.39
PTPRN-202ENST00000409251 NTAN1Q96AB6 310 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 PHF21AQ96BD5 680 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 MTERF3Q96E29 417 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 CNPPD1Q9BV87 410 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 FBXO44Q9H4M3 255 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 ASB1Q9Y576 335 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 ZFP37Q9Y6Q3 630 aaPredicted RBP12.64□□□□□ -0.39
PTPRN-202ENST00000409251 SCN5AQ14524 2016 aa12.64□□□□□ -0.39
PTPRN-202ENST00000409251 ELOVL7A1L3X0 281 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 EFCAB10A6NFE3 127 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 SLC38A8A6NNN8 435 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 PRSS23O95084 383 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 VNN2O95498 520 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 SLC26A3P40879 764 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 CLCN5P51795 746 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 GNG2P59768 71 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 TWF1Q12792 350 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 SLC39A5Q6ZMH5 540 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 GLB1L3Q8NCI6 653 aaPredicted RBP12.63□□□□□ -0.39
PTPRN-202ENST00000409251 OR2T11Q8NH01 316 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 OR52E6Q96RD3 313 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 MOV10Q9HCE1 1003 aaKnown RBP12.63□□□□□ -0.39
PTPRN-202ENST00000409251 SNTG1Q9NSN8 517 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 FBXO10Q9UK96 956 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 PCDHGC4Q9Y5F7 938 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 TDRD15B5MCY1 1934 aaKnown RBP12.63□□□□□ -0.39
PTPRN-202ENST00000409251 REV3LO60673 3130 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 H3BM21 787 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 TSPAN9O75954 239 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 AKT1P31749 480 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 IL12RB1P42701 662 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 ARCN1P48444 511 aaKnown RBP12.63□□□□□ -0.39
PTPRN-202ENST00000409251 NFE2L1Q14494 772 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 ZNF235Q14590 738 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 ZMAT1Q5H9K5 638 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 PRSS36Q5K4E3 855 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 C6orf136Q5SQH8 315 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 PROSER1Q86XN7 944 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 ATP6V0D2Q8N8Y2 350 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 SPPL2AQ8TCT8 520 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 PMEPA1Q969W9 287 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 IMPAD1Q9NX62 359 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 RNF6Q9Y252 685 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 TCRBV5S2A0A599 114 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 ARHGEF9O43307 516 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 NIPSNAP2O75323 286 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 ECI2O75521 394 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 CKMP06732 381 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 CPSF6Q16630 551 aaKnown RBP eCLIP12.63□□□□□ -0.39
PTPRN-202ENST00000409251 KCTD11Q693B1 232 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 GPRIN3Q6ZVF9 776 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 GALNT13Q8IUC8 556 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 TIGD4Q8IY51 512 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 SNAPC3Q92966 411 aa12.63□□□□□ -0.39
PTPRN-202ENST00000409251 VN1R3Q9BXE9 311 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms