RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 RNF219Q5W0B1 726 aaPredicted RBP20.43■□□□□ 0.86
CTCF-202ENST00000401394 REXO5Q96IC2 774 aaKnown RBP20.43■□□□□ 0.86
CTCF-202ENST00000401394 PSD2Q9BQI7 771 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 OR51E2Q9H255 320 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 FBXO44Q9H4M3 255 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 RMI1Q9H9A7 625 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 ANKMY1Q9P2S6 941 aa20.43■□□□□ 0.86
CTCF-202ENST00000401394 VCANP13611 3396 aa20.42■□□□□ 0.86
CTCF-202ENST00000401394 GBF1Q92538 1859 aa20.42■□□□□ 0.86
CTCF-202ENST00000401394 M0R082 166 aa20.42■□□□□ 0.86
CTCF-202ENST00000401394 OPN1SWP03999 348 aa20.42■□□□□ 0.86
CTCF-202ENST00000401394 HSMCR30P0CW71 290 aa20.42■□□□□ 0.86
CTCF-202ENST00000401394 BMPR1AP36894 532 aa20.42■□□□□ 0.86
CTCF-202ENST00000401394 NRIP1P48552 1158 aa20.42■□□□□ 0.86
CTCF-202ENST00000401394 CCDC92Q53HC0 331 aaPredicted RBP20.42■□□□□ 0.86
CTCF-202ENST00000401394 SYT6Q5T7P8 510 aaPredicted RBP20.42■□□□□ 0.86
CTCF-202ENST00000401394 OR2T5Q6IEZ7 315 aa20.42■□□□□ 0.86
CTCF-202ENST00000401394 ADNP2Q6IQ32 1131 aa20.42■□□□□ 0.86
CTCF-202ENST00000401394 HEATR4Q86WZ0 1026 aa20.42■□□□□ 0.86
CTCF-202ENST00000401394 OR2T29Q8NH02 315 aa20.42■□□□□ 0.86
CTCF-202ENST00000401394 SKA2Q8WVK7 121 aaPredicted RBP20.42■□□□□ 0.86
CTCF-202ENST00000401394 FBXO8Q9NRD0 319 aa20.42■□□□□ 0.86
CTCF-202ENST00000401394 ATP11BQ9Y2G3 1177 aa20.42■□□□□ 0.86
CTCF-202ENST00000401394 ANKRD36A6QL64 1941 aa20.42■□□□□ 0.86
CTCF-202ENST00000401394 YBEYP58557 167 aaPredicted RBP20.42■□□□□ 0.86
CTCF-202ENST00000401394 MGAT3Q09327 533 aa20.42■□□□□ 0.86
CTCF-202ENST00000401394 MORN1Q5T089 497 aa20.42■□□□□ 0.86
CTCF-202ENST00000401394 RLIMQ9NVW2 624 aa20.42■□□□□ 0.86
CTCF-202ENST00000401394 TDRD15B5MCY1 1934 aaKnown RBP20.42■□□□□ 0.86
CTCF-202ENST00000401394 IFRD1O00458 451 aaPredicted RBP20.41■□□□□ 0.86
CTCF-202ENST00000401394 S100BP04271 92 aaPredicted RBP20.41■□□□□ 0.86
CTCF-202ENST00000401394 ADRA2AP08913 450 aa20.41■□□□□ 0.86
CTCF-202ENST00000401394 POU2F1P14859 743 aa20.41■□□□□ 0.86
CTCF-202ENST00000401394 ALOX12P18054 663 aa20.41■□□□□ 0.86
CTCF-202ENST00000401394 S100A3P33764 101 aa20.41■□□□□ 0.86
CTCF-202ENST00000401394 CACHD1Q5VU97 1274 aa20.41■□□□□ 0.86
CTCF-202ENST00000401394 SHQ1Q6PI26 577 aaKnown RBP20.41■□□□□ 0.86
CTCF-202ENST00000401394 ARMC8Q8IUR7 673 aa20.41■□□□□ 0.86
CTCF-202ENST00000401394 ENTHD1Q8IYW4 607 aa20.41■□□□□ 0.86
CTCF-202ENST00000401394 PEX13Q92968 403 aa20.41■□□□□ 0.86
CTCF-202ENST00000401394 ITPKCQ96DU7 683 aa20.41■□□□□ 0.86
CTCF-202ENST00000401394 RDH12Q96NR8 316 aa20.41■□□□□ 0.86
CTCF-202ENST00000401394 ASB8Q9H765 288 aa20.41■□□□□ 0.86
CTCF-202ENST00000401394 AASDHPPTQ9NRN7 309 aa20.41■□□□□ 0.86
CTCF-202ENST00000401394 BOLA1Q9Y3E2 137 aa20.41■□□□□ 0.86
CTCF-202ENST00000401394 PLXNA4Q9HCM2 1894 aa20.41■□□□□ 0.86
CTCF-202ENST00000401394 PFDN6O15212 129 aa20.41■□□□□ 0.86
CTCF-202ENST00000401394 NTRK1P04629 796 aa20.41■□□□□ 0.86
CTCF-202ENST00000401394 SERPINB1P30740 379 aa20.41■□□□□ 0.86
CTCF-202ENST00000401394 KDM4DQ6B0I6 523 aa20.41■□□□□ 0.86
CTCF-202ENST00000401394 ZNF621Q6ZSS3 439 aa20.41■□□□□ 0.86
CTCF-202ENST00000401394 CALHM3Q86XJ0 350 aa20.41■□□□□ 0.86
CTCF-202ENST00000401394 SCAIQ8N9R8 606 aa20.41■□□□□ 0.86
CTCF-202ENST00000401394 FBLIM1Q8WUP2 373 aa20.41■□□□□ 0.86
CTCF-202ENST00000401394 KIF17Q9P2E2 1029 aa20.41■□□□□ 0.86
CTCF-202ENST00000401394 PCDHB5Q9Y5E4 795 aa20.41■□□□□ 0.86
CTCF-202ENST00000401394 GAPDHSO14556 408 aaPredicted RBP20.4■□□□□ 0.86
CTCF-202ENST00000401394 DSCR3O14972 297 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 RAD51BO15315 384 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 BNIP3LO60238 219 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 PRAMEF4O60810 478 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 PCYT1AP49585 367 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 HUNKP57058 714 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 RPS14P62263 151 aaKnown RBP20.4■□□□□ 0.86
CTCF-202ENST00000401394 LRIT3Q3SXY7 679 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 ZNF648Q5T619 568 aaPredicted RBP20.4■□□□□ 0.86
CTCF-202ENST00000401394 PRAMEF9Q5VWM5 478 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 HIPK1Q86Z02 1210 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 HSH2DQ96JZ2 352 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 CENPOQ9BU64 300 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 KATNAL1Q9BW62 490 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 CD244Q9BZW8 370 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 RAD18Q9NS91 495 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 KRT84Q9NSB2 600 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 GPR83Q9NYM4 423 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 PCDHB8Q9UN66 801 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 GABRQQ9UN88 632 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 BTBD3Q9Y2F9 522 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 RFXANKO14593 260 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 SNPHO15079 494 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 CLDN7O95471 211 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 BCL2A1Q16548 175 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 USP50Q70EL3 339 aaPredicted RBP20.4■□□□□ 0.86
CTCF-202ENST00000401394 SNX20Q7Z614 316 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 SERINC5Q86VE9 423 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 CCDC103Q8IW40 242 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 TTPALQ9BTX7 342 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 PRM3Q9NNZ6 103 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 NECTIN3Q9NQS3 549 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 TLR8Q9NR97 1041 aaKnown RBP20.4■□□□□ 0.86
CTCF-202ENST00000401394 SCN3BQ9NY72 215 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 IL17CQ9P0M4 197 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 OSGIN1Q9UJX0 560 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 TPRKBQ9Y3C4 175 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 SNX8Q9Y5X2 465 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 OR2A25A4D2G3 310 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 ADAM12O43184 909 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 CYP7B1O75881 506 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 IGLV3-27P01718 113 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 IL6P05231 212 aa20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms