RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 CYP2U1Q7Z449 544 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 GALNT10Q86SR1 603 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 STK32CQ86UX6 486 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 C12orf40Q86WS4 652 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 OR7A2PQ8NGA2 310 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 SAMD11Q96NU1 681 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 BARD1Q99728 777 aaKnown RBP13□□□□□ -0.33
CCDC3-202ENST00000378839 MAN2B2Q9Y2E5 1009 aa13□□□□□ -0.33
CCDC3-202ENST00000378839 CXorf51AA0A1B0GTR3 108 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 E7EQ34 232 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 TSPAN6O43657 245 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 SH3BGRLO75368 114 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 CREG1O75629 220 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 TRMUO75648 421 aaKnown RBP12.99□□□□□ -0.33
CCDC3-202ENST00000378839 MPC1LP0DKB6 136 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 SYN1P17600 705 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 PRPH2P23942 346 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 ALDH3A2P51648 485 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 WNT3P56703 355 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 CHIT1Q13231 466 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 GRIN2CQ14957 1233 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 FAM98BQ52LJ0 330 aaKnown RBP12.99□□□□□ -0.33
CCDC3-202ENST00000378839 TCEAL5Q5H9L2 206 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 ZNF697Q5TEC3 545 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 LAIR2Q6ISS4 152 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 ANKRD26P1Q6NSI1 321 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 XKR5Q6UX68 686 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 LPCAT2Q7L5N7 544 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 GPR149Q86SP6 731 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 MICU2Q8IYU8 434 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 ING5Q8WYH8 240 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 CLP1Q92989 425 aaKnown RBP12.99□□□□□ -0.33
CCDC3-202ENST00000378839 SLC47A1Q96FL8 570 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 NAA50Q9GZZ1 169 aaKnown RBP12.99□□□□□ -0.33
CCDC3-202ENST00000378839 CD320Q9NPF0 282 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 DCAF13Q9NV06 445 aaKnown RBP12.99□□□□□ -0.33
CCDC3-202ENST00000378839 ANTXRLA6NF34 631 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 NPC1O15118 1278 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 GSTA4O15217 222 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 SPINT1O43278 529 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 SCN2BO60939 215 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 SLCO2B1O94956 709 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 EFNA1P20827 205 aaPredicted RBP12.99□□□□□ -0.33
CCDC3-202ENST00000378839 PDHA2P29803 388 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 VIPR1P32241 457 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 GALK1P51570 392 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 HTRA4P83105 476 aaPredicted RBP12.99□□□□□ -0.33
CCDC3-202ENST00000378839 CHRNB3Q05901 458 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 DAG1Q14118 895 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 UGT8Q16880 541 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 PLEKHS1Q5SXH7 462 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 FRG2Q64ET8 278 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 ABRAXAS1Q6UWZ7 409 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 ZBTB46Q86UZ6 589 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 ELMOD1Q8N336 334 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 CMTM7Q96FZ5 175 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 FRG2BQ96QU4 278 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 KCNH6Q9H252 994 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 TOR3AQ9H497 397 aa12.99□□□□□ -0.33
CCDC3-202ENST00000378839 SERPINA1P01009 418 aa12.98□□□□□ -0.33
CCDC3-202ENST00000378839 CDK4P11802 303 aa12.98□□□□□ -0.33
CCDC3-202ENST00000378839 PFKLP17858 780 aa12.98□□□□□ -0.33
CCDC3-202ENST00000378839 IRS1P35568 1242 aa12.98□□□□□ -0.33
CCDC3-202ENST00000378839 CREMQ03060 361 aa12.98□□□□□ -0.33
CCDC3-202ENST00000378839 NOXRED1Q6NXP6 359 aa12.98□□□□□ -0.33
CCDC3-202ENST00000378839 TECPR1Q7Z6L1 1165 aa12.98□□□□□ -0.33
CCDC3-202ENST00000378839 GALNT13Q8IUC8 556 aa12.98□□□□□ -0.33
CCDC3-202ENST00000378839 MRPL43Q8N983 215 aaKnown RBP12.98□□□□□ -0.33
CCDC3-202ENST00000378839 WDR20Q8TBZ3 569 aa12.98□□□□□ -0.33
CCDC3-202ENST00000378839 MTERF1Q99551 399 aaKnown RBP12.98□□□□□ -0.33
CCDC3-202ENST00000378839 HEPHQ9BQS7 1158 aa12.98□□□□□ -0.33
CCDC3-202ENST00000378839 DNAJC11Q9NVH1 559 aa12.98□□□□□ -0.33
CCDC3-202ENST00000378839 PKD2L2Q9NZM6 624 aa12.98□□□□□ -0.33
CCDC3-202ENST00000378839 DNAH14Q0VDD8 3507 aa12.98□□□□□ -0.33
CCDC3-202ENST00000378839 A0A096LPI6 279 aa12.98□□□□□ -0.33
CCDC3-202ENST00000378839 EIF3FO00303 357 aaPredicted RBP12.98□□□□□ -0.33
CCDC3-202ENST00000378839 CST1P01037 141 aa12.98□□□□□ -0.33
CCDC3-202ENST00000378839 EPCAMP16422 314 aa12.98□□□□□ -0.33
CCDC3-202ENST00000378839 S100A3P33764 101 aa12.98□□□□□ -0.33
CCDC3-202ENST00000378839 HALP42357 657 aa12.98□□□□□ -0.33
CCDC3-202ENST00000378839 BDKRB1P46663 353 aa12.98□□□□□ -0.33
CCDC3-202ENST00000378839 HNMTP50135 292 aa12.98□□□□□ -0.33
CCDC3-202ENST00000378839 DYNC1I2Q13409 638 aaKnown RBP12.98□□□□□ -0.33
CCDC3-202ENST00000378839 RBM23Q86U06 439 aaKnown RBP12.98□□□□□ -0.33
CCDC3-202ENST00000378839 SFTPA1Q8IWL2 248 aa12.98□□□□□ -0.33
CCDC3-202ENST00000378839 FAM162AQ96A26 154 aa12.98□□□□□ -0.33
CCDC3-202ENST00000378839 FCRL1Q96LA6 429 aa12.98□□□□□ -0.33
CCDC3-202ENST00000378839 SNX6Q9UNH7 406 aa12.98□□□□□ -0.33
CCDC3-202ENST00000378839 A0A087WXM4 84 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 ZBBXA8MT70 800 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 G3V2T6 193 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 ARHGEF15O94989 841 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 HIST1H2AGP0C0S8 130 aaPredicted RBP12.97□□□□□ -0.33
CCDC3-202ENST00000378839 HIST1H2ADP20671 130 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 PPP2R2BQ00005 443 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 CAMK1Q14012 370 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 ATG9BQ674R7 924 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 CES5AQ6NT32 575 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 BRAT1Q6PJG6 821 aa12.97□□□□□ -0.33
CCDC3-202ENST00000378839 DOK6Q6PKX4 331 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms