RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 ECH1Q13011 328 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 GALNT11Q8NCW6 608 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 AMDHD1Q96NU7 426 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 YIPF4Q9BSR8 244 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.46□□□□□ -1.06
SYNE1-206ENST00000367253 OPTCQ9UBM4 332 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 A0A1W2PRU2 124 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 H3BNX3 289 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 XKRYO14609 159 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 B3GALT2O43825 422 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 P04436 131 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 RPS17P08708 135 aaKnown RBP8.46□□□□□ -1.06
SYNE1-206ENST00000367253 UGT1A5P35504 534 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 GNPDA1P46926 289 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 CDK9P50750 372 aaKnown RBP8.46□□□□□ -1.06
SYNE1-206ENST00000367253 PNLIPRP1P54315 467 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 PTENP60484 403 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 FOLH1Q04609 750 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 DOC2AQ14183 400 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 RFX4Q33E94 735 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 C11orf91Q3C1V1 193 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 TMEM151BQ8IW70 566 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 COLGALT1Q8NBJ5 622 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 RAD51AP1Q96B01 352 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 VSX1Q9NZR4 365 aaPredicted RBP8.46□□□□□ -1.06
SYNE1-206ENST00000367253 SLC6A14Q9UN76 642 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 ZDHHC9Q9Y397 364 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 SLC38A8A6NNN8 435 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 SPATA31C2B4DYI2 1134 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 PGLSO95336 258 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 IDO1P14902 403 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 YBX3P16989 372 aaKnown RBP eCLIP8.46□□□□□ -1.06
SYNE1-206ENST00000367253 SCN1BQ07699 218 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 MAP4K2Q12851 820 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 ZNF155Q12901 538 aaPredicted RBP8.46□□□□□ -1.06
SYNE1-206ENST00000367253 ZNF268Q14587 947 aaPredicted RBP8.46□□□□□ -1.06
SYNE1-206ENST00000367253 FAM153CQ494X1 144 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 UBAP2Q5T6F2 1119 aaKnown RBP8.46□□□□□ -1.06
SYNE1-206ENST00000367253 GPRC6AQ5T6X5 926 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 PXDC1Q5TGL8 231 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.46□□□□□ -1.06
SYNE1-206ENST00000367253 BPHLQ86WA6 291 aaPredicted RBP8.46□□□□□ -1.06
SYNE1-206ENST00000367253 HPS6Q86YV9 775 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 KIAA0319LQ8IZA0 1049 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 TMEM132CQ8N3T6 1108 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 PGM2Q96G03 612 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 ERMAPQ96PL5 475 aaPredicted RBP8.46□□□□□ -1.06
SYNE1-206ENST00000367253 PORCNQ9H237 461 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 TSPAN16Q9UKR8 245 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 NWD2Q9ULI1 1742 aa8.46□□□□□ -1.06
SYNE1-206ENST00000367253 A0A087X0B3 334 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 NFKBIEO00221 500 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 VNN2O95498 520 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 C1RP00736 705 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 GLI1P08151 1106 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 PTNP21246 168 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 TM4SF4P48230 202 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 DIO1P49895 249 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 CDH4P55283 916 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 PKNOX1P55347 436 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 GCNT1Q02742 428 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 RALGPS2Q86X27 583 aaPredicted RBP8.45□□□□□ -1.06
SYNE1-206ENST00000367253 SKA3Q8IX90 412 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 RBFAQ8N0V3 343 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 PARP8Q8N3A8 854 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 NKAPQ8N5F7 415 aaKnown RBP8.45□□□□□ -1.06
SYNE1-206ENST00000367253 TCP10LQ8TDR4 215 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 OXER1Q8TDS5 423 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 APOPT1Q96IL0 206 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 ZBED3Q96IU2 234 aaPredicted RBP8.45□□□□□ -1.06
SYNE1-206ENST00000367253 IP6K3Q96PC2 410 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 TKTL2Q9H0I9 626 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 METTL7AQ9H8H3 244 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 IKZF3Q9UKT9 509 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 A0A096LPI6 279 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 HAX1O00165 279 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 POLR1CO15160 346 aaPredicted RBP8.45□□□□□ -1.06
SYNE1-206ENST00000367253 ZNF208O43345 1280 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 MT-CO1P00395 513 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 IFNA10P01566 189 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 IFNA4P05014 189 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 IGFBP1P08833 259 aaPredicted RBP8.45□□□□□ -1.06
SYNE1-206ENST00000367253 NR2F6P10588 404 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 EDN3P14138 238 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 DGKQP52824 942 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 ARFIP1P53367 373 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 HSDL1Q3SXM5 330 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 TRIM61Q5EBN2 209 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 DCST1Q5T197 706 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 TMEM198Q66K66 360 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 STRA8Q7Z7C7 330 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 FAM160A2Q8N612 972 aaPredicted RBP8.45□□□□□ -1.06
SYNE1-206ENST00000367253 TERB2Q8NHR7 220 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 NANOS1Q8WY41 292 aaKnown RBP8.45□□□□□ -1.06
SYNE1-206ENST00000367253 ERGIC2Q96RQ1 377 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 MFFQ9GZY8 342 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 IL25Q9H293 177 aa8.45□□□□□ -1.06
SYNE1-206ENST00000367253 ZNF282Q9UDV7 671 aaPredicted RBP8.45□□□□□ -1.06
SYNE1-206ENST00000367253 A0A0A6YYK5 440 aaPredicted RBP8.45□□□□□ -1.06
SYNE1-206ENST00000367253 PRODHO43272 600 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms