RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 DNAJC7Q99615 494 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 RNF32Q9H0A6 362 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 PLA2G3Q9NZ20 509 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 C3orf18Q9UK00 162 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 INTUQ9ULD6 942 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 KLHL20Q9Y2M5 609 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 GTF3C3Q9Y5Q9 886 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 FAM169AQ9Y6X4 670 aa13.23□□□□□ -0.29
VPS29-201ENST00000360579 A0A1W2PQ72 361 aa13.22□□□□□ -0.29
VPS29-201ENST00000360579 TARM1B6A8C7 271 aa13.22□□□□□ -0.29
VPS29-201ENST00000360579 ZNF189O75820 626 aaPredicted RBP13.22□□□□□ -0.29
VPS29-201ENST00000360579 WFS1O76024 890 aa13.22□□□□□ -0.29
VPS29-201ENST00000360579 BMP10O95393 424 aa13.22□□□□□ -0.29
VPS29-201ENST00000360579 PRSS56P0CW18 603 aa13.22□□□□□ -0.29
VPS29-201ENST00000360579 ESRRAP11474 423 aaPredicted RBP13.22□□□□□ -0.29
VPS29-201ENST00000360579 MCM3P25205 808 aa13.22□□□□□ -0.29
VPS29-201ENST00000360579 SF1Q15637 639 aaKnown RBP13.22□□□□□ -0.29
VPS29-201ENST00000360579 FIGLAQ6QHK4 219 aa13.22□□□□□ -0.29
VPS29-201ENST00000360579 METTL27Q8N6F8 245 aaPredicted RBP13.22□□□□□ -0.29
VPS29-201ENST00000360579 LINC01555Q8NAE3 123 aa13.22□□□□□ -0.29
VPS29-201ENST00000360579 STYXQ8WUJ0 223 aa13.22□□□□□ -0.29
VPS29-201ENST00000360579 PSMF1Q92530 271 aa13.22□□□□□ -0.29
VPS29-201ENST00000360579 TTC1Q99614 292 aa13.22□□□□□ -0.29
VPS29-201ENST00000360579 PRSS21Q9Y6M0 314 aa13.22□□□□□ -0.29
VPS29-201ENST00000360579 MAU2Q9Y6X3 613 aa13.22□□□□□ -0.29
VPS29-201ENST00000360579 HYKKA2RU49 373 aa13.21□□□□□ -0.29
VPS29-201ENST00000360579 GOLGA6L19H0YKK7 550 aa13.21□□□□□ -0.29
VPS29-201ENST00000360579 SLC19A2O60779 497 aa13.21□□□□□ -0.29
VPS29-201ENST00000360579 COX6A1P12074 109 aa13.21□□□□□ -0.29
VPS29-201ENST00000360579 CTNNA2P26232 953 aa13.21□□□□□ -0.29
VPS29-201ENST00000360579 GRIA3P42263 894 aa13.21□□□□□ -0.29
VPS29-201ENST00000360579 TRIM14Q14142 442 aa13.21□□□□□ -0.29
VPS29-201ENST00000360579 TESK1Q15569 626 aa13.21□□□□□ -0.29
VPS29-201ENST00000360579 LONRF1Q17RB8 773 aa13.21□□□□□ -0.29
VPS29-201ENST00000360579 WASHC2DQ5SRD0 308 aa13.21□□□□□ -0.29
VPS29-201ENST00000360579 LUZP1Q86V48 1076 aa13.21□□□□□ -0.29
VPS29-201ENST00000360579 DCUN1D3Q8IWE4 304 aa13.21□□□□□ -0.29
VPS29-201ENST00000360579 SLC22A15Q8IZD6 547 aa13.21□□□□□ -0.29
VPS29-201ENST00000360579 ZNF295-AS1Q8N0V1 137 aa13.21□□□□□ -0.29
VPS29-201ENST00000360579 SIRT6Q8N6T7 355 aa13.21□□□□□ -0.29
VPS29-201ENST00000360579 OR2L8Q8NGY9 312 aa13.21□□□□□ -0.29
VPS29-201ENST00000360579 C8orf44Q96CB5 159 aa13.21□□□□□ -0.29
VPS29-201ENST00000360579 C14orf79Q96F83 325 aa13.21□□□□□ -0.29
VPS29-201ENST00000360579 SPATA13Q96N96 652 aa13.21□□□□□ -0.29
VPS29-201ENST00000360579 MENTQ9BUN1 341 aa13.21□□□□□ -0.29
VPS29-201ENST00000360579 TSSK1BQ9BXA7 367 aa13.21□□□□□ -0.29
VPS29-201ENST00000360579 RAB11FIP5Q9BXF6 653 aa13.21□□□□□ -0.29
VPS29-201ENST00000360579 C10orf88Q9H8K7 445 aa13.21□□□□□ -0.29
VPS29-201ENST00000360579 SPTLC3Q9NUV7 552 aa13.21□□□□□ -0.29
VPS29-201ENST00000360579 RIC8BQ9NVN3 520 aa13.21□□□□□ -0.29
VPS29-201ENST00000360579 IFNKQ9P0W0 207 aa13.21□□□□□ -0.29
VPS29-201ENST00000360579 SH3BGRL2Q9UJC5 107 aa13.21□□□□□ -0.29
VPS29-201ENST00000360579 SLC39A10Q9ULF5 831 aa13.21□□□□□ -0.29
VPS29-201ENST00000360579 ALG6Q9Y672 507 aa13.21□□□□□ -0.29
VPS29-201ENST00000360579 IGLV3-12A0A075B6K2 115 aa13.2□□□□□ -0.3
VPS29-201ENST00000360579 PRPF4O43172 522 aaKnown RBP eCLIP13.2□□□□□ -0.3
VPS29-201ENST00000360579 PRAMEF2O60811 474 aa13.2□□□□□ -0.3
VPS29-201ENST00000360579 MLYCDO95822 493 aa13.2□□□□□ -0.3
VPS29-201ENST00000360579 ICAM2P13598 275 aa13.2□□□□□ -0.3
VPS29-201ENST00000360579 FBLP22087 321 aaKnown RBP13.2□□□□□ -0.3
VPS29-201ENST00000360579 MSNP26038 577 aaKnown RBP13.2□□□□□ -0.3
VPS29-201ENST00000360579 MST1P26927 711 aa13.2□□□□□ -0.3
VPS29-201ENST00000360579 EMP2P54851 167 aa13.2□□□□□ -0.3
VPS29-201ENST00000360579 HADHBP55084 474 aaKnown RBP13.2□□□□□ -0.3
VPS29-201ENST00000360579 VSX2P58304 361 aaPredicted RBP13.2□□□□□ -0.3
VPS29-201ENST00000360579 COPS2P61201 443 aa13.2□□□□□ -0.3
VPS29-201ENST00000360579 MUM1Q2TAK8 710 aa13.2□□□□□ -0.3
VPS29-201ENST00000360579 TTC23LQ6PF05 361 aa13.2□□□□□ -0.3
VPS29-201ENST00000360579 UNC5DQ6UXZ4 953 aa13.2□□□□□ -0.3
VPS29-201ENST00000360579 NAPRTQ6XQN6 538 aa13.2□□□□□ -0.3
VPS29-201ENST00000360579 CDH24Q86UP0 819 aa13.2□□□□□ -0.3
VPS29-201ENST00000360579 PRSS58Q8IYP2 241 aa13.2□□□□□ -0.3
VPS29-201ENST00000360579 RAB42Q8N4Z0 105 aa13.2□□□□□ -0.3
VPS29-201ENST00000360579 ACTL9Q8TC94 416 aa13.2□□□□□ -0.3
VPS29-201ENST00000360579 CHTF18Q8WVB6 975 aa13.2□□□□□ -0.3
VPS29-201ENST00000360579 ASZ1Q8WWH4 475 aa13.2□□□□□ -0.3
VPS29-201ENST00000360579 MTFMTQ96DP5 389 aaKnown RBP13.2□□□□□ -0.3
VPS29-201ENST00000360579 HEMGNQ9BXL5 484 aa13.2□□□□□ -0.3
VPS29-201ENST00000360579 NHEJ1Q9H9Q4 299 aaPredicted RBP13.2□□□□□ -0.3
VPS29-201ENST00000360579 C14orf105Q9NVL8 296 aa13.2□□□□□ -0.3
VPS29-201ENST00000360579 TEKT2Q9UIF3 430 aa13.2□□□□□ -0.3
VPS29-201ENST00000360579 CDC14AQ9UNH5 594 aa13.2□□□□□ -0.3
VPS29-201ENST00000360579 KLK4Q9Y5K2 254 aa13.2□□□□□ -0.3
VPS29-201ENST00000360579 IGHV1-45A0A0A0MS14 117 aa13.19□□□□□ -0.3
VPS29-201ENST00000360579 MACROD2A1Z1Q3 448 aa13.19□□□□□ -0.3
VPS29-201ENST00000360579 OR5H15A6NDH6 313 aa13.19□□□□□ -0.3
VPS29-201ENST00000360579 IDSB3KWA1 339 aa13.19□□□□□ -0.3
VPS29-201ENST00000360579 RASGRF2O14827 1237 aa13.19□□□□□ -0.3
VPS29-201ENST00000360579 CLDN14O95500 239 aa13.19□□□□□ -0.3
VPS29-201ENST00000360579 WDPCPO95876 746 aa13.19□□□□□ -0.3
VPS29-201ENST00000360579 TPM1P09493 284 aa13.19□□□□□ -0.3
VPS29-201ENST00000360579 ERVK-10P10266 1014 aa13.19□□□□□ -0.3
VPS29-201ENST00000360579 RBP3P10745 1247 aa13.19□□□□□ -0.3
VPS29-201ENST00000360579 PSMA3P25788 255 aa13.19□□□□□ -0.3
VPS29-201ENST00000360579 EIF3EP60228 445 aaKnown RBP13.19□□□□□ -0.3
VPS29-201ENST00000360579 ADORA2A-AS1P86434 159 aa13.19□□□□□ -0.3
VPS29-201ENST00000360579 HSPA14Q0VDF9 509 aa13.19□□□□□ -0.3
VPS29-201ENST00000360579 SPARCL1Q14515 664 aa13.19□□□□□ -0.3
VPS29-201ENST00000360579 POU6F1Q14863 301 aa13.19□□□□□ -0.3
VPS29-201ENST00000360579 NAA25Q14CX7 972 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms